Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02248
Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | PYE with Benzalkonium Chloride 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,396,091 | + | -0.4 | |||
2,396,091 | + | -0.8 | |||
2,396,137 | - | -1.2 | |||
2,396,162 | - | -1.1 | |||
2,396,179 | - | -0.0 | |||
2,396,202 | - | +1.5 | |||
2,397,073 | - | -1.0 | |||
2,397,073 | - | +0.6 | |||
2,397,106 | + | CCNA_02248 | 0.37 | -3.1 | |
2,397,191 | + | -1.1 | |||
2,397,306 | - | CCNA_02249 | 0.17 | -1.3 | |
2,397,311 | - | CCNA_02249 | 0.19 | +0.2 | |
2,397,400 | - | CCNA_02249 | 0.41 | +0.1 | |
2,397,476 | - | CCNA_02249 | 0.60 | +0.3 | |
2,397,512 | - | CCNA_02249 | 0.69 | +0.8 | |
2,397,513 | - | CCNA_02249 | 0.69 | -1.5 | |
2,397,543 | + | CCNA_02249 | 0.77 | +0.3 | |
2,397,584 | - | CCNA_02249 | 0.87 | +1.1 | |
2,397,584 | - | CCNA_02249 | 0.87 | +1.6 | |
2,397,614 | + | -0.9 | |||
2,397,637 | - | +0.9 | |||
2,397,646 | - | +1.2 | |||
2,397,646 | - | -0.3 | |||
2,397,659 | + | -1.8 | |||
2,397,697 | - | +1.7 | |||
2,397,763 | + | +0.7 | |||
2,397,763 | + | -0.4 | |||
2,397,771 | - | +1.6 | |||
2,397,776 | - | +0.9 | |||
2,397,839 | + | -1.3 | |||
2,397,841 | + | -0.0 | |||
2,397,865 | - | +1.2 | |||
2,397,875 | - | +1.0 | |||
2,398,020 | - | +1.7 | |||
2,398,154 | - | CCNA_02250 | 0.16 | +2.0 |
Or see this region's nucleotide sequence