Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01959

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01957 and CCNA_01958 are separated by 144 nucleotidesCCNA_01958 and CCNA_01959 are separated by 78 nucleotidesCCNA_01959 and CCNA_01960 are separated by 60 nucleotidesCCNA_01960 and CCNA_01961 are separated by 5 nucleotides CCNA_01957: CCNA_01957 - thiazole biosynthesis protein ThiG, at 2,102,616 to 2,103,425 _01957 CCNA_01958: CCNA_01958 - ThiaminS ubiquitin-like sulfur carrier protein ThiS, at 2,103,570 to 2,103,770 _01958 CCNA_01959: CCNA_01959 - 3-dehydroquinate dehydratase, at 2,103,849 to 2,104,289 _01959 CCNA_01960: CCNA_01960 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 2,104,350 to 2,104,862 _01960 CCNA_01961: CCNA_01961 - biotin carboxylase, at 2,104,868 to 2,106,214 _01961 Position (kb) 2103 2104 2105Strain fitness (log2 ratio) -1 0 1 2at 2103.440 kb on - strandat 2103.496 kb on + strandat 2103.496 kb on + strandat 2103.504 kb on - strandat 2103.514 kb on + strandat 2103.537 kb on - strandat 2103.550 kb on + strandat 2103.568 kb on + strandat 2103.776 kb on - strandat 2103.793 kb on - strandat 2103.816 kb on + strandat 2103.816 kb on + strandat 2103.953 kb on + strand, within CCNA_01959at 2104.139 kb on + strand, within CCNA_01959at 2104.149 kb on + strand, within CCNA_01959at 2104.154 kb on + strand, within CCNA_01959at 2104.154 kb on + strand, within CCNA_01959at 2104.221 kb on + strand, within CCNA_01959at 2104.267 kb on + strandat 2104.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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2,103,440 - +1.2
2,103,496 + +0.4
2,103,496 + +0.2
2,103,504 - +0.6
2,103,514 + -1.2
2,103,537 - -0.8
2,103,550 + -0.7
2,103,568 + +1.5
2,103,776 - +0.4
2,103,793 - -0.4
2,103,816 + -1.2
2,103,816 + +0.6
2,103,953 + CCNA_01959 0.24 -0.1
2,104,139 + CCNA_01959 0.66 +2.5
2,104,149 + CCNA_01959 0.68 +2.6
2,104,154 + CCNA_01959 0.69 +1.5
2,104,154 + CCNA_01959 0.69 +2.3
2,104,221 + CCNA_01959 0.84 +0.5
2,104,267 + -1.0
2,104,293 + +0.2

Or see this region's nucleotide sequence