Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01948 and CCNA_01949 overlap by 20 nucleotides CCNA_01949 and CCNA_01950 are separated by 77 nucleotides
CCNA_01948: CCNA_01948 - peptidoglycan-specific endopeptidase, M23 family, at 2,090,363 to 2,091,514
_01948
CCNA_01949: CCNA_01949 - bactofilin A BacA, at 2,091,495 to 2,091,980
_01949
CCNA_01950: CCNA_01950 - peptide chain Release factor 2 (RF-2), at 2,092,058 to 2,093,173
_01950
Position (kb)
2091
2092 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2090.526 kb on - strand, within CCNA_01948 at 2090.526 kb on - strand, within CCNA_01948 at 2090.612 kb on + strand, within CCNA_01948 at 2090.627 kb on + strand, within CCNA_01948 at 2090.635 kb on - strand, within CCNA_01948 at 2090.636 kb on + strand, within CCNA_01948 at 2090.636 kb on + strand, within CCNA_01948 at 2090.636 kb on + strand, within CCNA_01948 at 2090.640 kb on - strand, within CCNA_01948 at 2090.644 kb on - strand, within CCNA_01948 at 2090.644 kb on - strand, within CCNA_01948 at 2090.644 kb on - strand, within CCNA_01948 at 2090.727 kb on + strand, within CCNA_01948 at 2090.727 kb on + strand, within CCNA_01948 at 2090.735 kb on - strand, within CCNA_01948 at 2090.737 kb on - strand, within CCNA_01948 at 2090.840 kb on + strand, within CCNA_01948 at 2090.848 kb on - strand, within CCNA_01948 at 2090.849 kb on + strand, within CCNA_01948 at 2090.864 kb on + strand, within CCNA_01948 at 2090.864 kb on + strand, within CCNA_01948 at 2090.864 kb on + strand, within CCNA_01948 at 2090.872 kb on - strand, within CCNA_01948 at 2090.872 kb on - strand, within CCNA_01948 at 2090.921 kb on + strand, within CCNA_01948 at 2090.986 kb on + strand, within CCNA_01948 at 2091.016 kb on - strand, within CCNA_01948 at 2091.016 kb on - strand, within CCNA_01948 at 2091.028 kb on - strand, within CCNA_01948 at 2091.164 kb on - strand, within CCNA_01948 at 2091.194 kb on + strand, within CCNA_01948 at 2091.234 kb on - strand, within CCNA_01948 at 2091.248 kb on - strand, within CCNA_01948 at 2091.253 kb on - strand, within CCNA_01948 at 2091.281 kb on + strand, within CCNA_01948 at 2091.393 kb on + strand, within CCNA_01948 at 2091.443 kb on - strand at 2091.448 kb on - strand at 2091.451 kb on + strand at 2091.458 kb on + strand at 2091.458 kb on + strand at 2091.466 kb on - strand at 2091.535 kb on - strand at 2091.565 kb on - strand, within CCNA_01949 at 2091.597 kb on + strand, within CCNA_01949 at 2091.599 kb on + strand, within CCNA_01949 at 2091.599 kb on + strand, within CCNA_01949 at 2091.617 kb on + strand, within CCNA_01949 at 2091.796 kb on + strand, within CCNA_01949 at 2091.806 kb on + strand, within CCNA_01949 at 2091.942 kb on + strand at 2091.975 kb on + strand at 2092.082 kb on + strand at 2092.090 kb on - strand at 2092.090 kb on - strand at 2092.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 2,090,526 - CCNA_01948 0.14 -0.5 2,090,526 - CCNA_01948 0.14 -1.9 2,090,612 + CCNA_01948 0.22 +1.3 2,090,627 + CCNA_01948 0.23 +0.4 2,090,635 - CCNA_01948 0.24 +1.0 2,090,636 + CCNA_01948 0.24 +1.6 2,090,636 + CCNA_01948 0.24 -2.1 2,090,636 + CCNA_01948 0.24 +0.4 2,090,640 - CCNA_01948 0.24 -0.6 2,090,644 - CCNA_01948 0.24 -0.3 2,090,644 - CCNA_01948 0.24 -1.3 2,090,644 - CCNA_01948 0.24 -2.2 2,090,727 + CCNA_01948 0.32 +0.7 2,090,727 + CCNA_01948 0.32 +1.0 2,090,735 - CCNA_01948 0.32 -0.5 2,090,737 - CCNA_01948 0.32 +2.6 2,090,840 + CCNA_01948 0.41 +1.3 2,090,848 - CCNA_01948 0.42 -0.4 2,090,849 + CCNA_01948 0.42 -0.3 2,090,864 + CCNA_01948 0.43 +0.6 2,090,864 + CCNA_01948 0.43 +0.5 2,090,864 + CCNA_01948 0.43 +0.2 2,090,872 - CCNA_01948 0.44 +1.7 2,090,872 - CCNA_01948 0.44 -1.9 2,090,921 + CCNA_01948 0.48 +0.6 2,090,986 + CCNA_01948 0.54 -1.4 2,091,016 - CCNA_01948 0.57 -1.1 2,091,016 - CCNA_01948 0.57 -0.9 2,091,028 - CCNA_01948 0.58 +1.6 2,091,164 - CCNA_01948 0.70 -0.6 2,091,194 + CCNA_01948 0.72 -1.2 2,091,234 - CCNA_01948 0.76 -0.3 2,091,248 - CCNA_01948 0.77 -2.4 2,091,253 - CCNA_01948 0.77 +1.2 2,091,281 + CCNA_01948 0.80 -0.6 2,091,393 + CCNA_01948 0.89 +1.6 2,091,443 - +1.1 2,091,448 - -1.0 2,091,451 + +1.2 2,091,458 + -0.6 2,091,458 + +1.5 2,091,466 - +0.2 2,091,535 - +1.3 2,091,565 - CCNA_01949 0.14 +0.6 2,091,597 + CCNA_01949 0.21 +1.6 2,091,599 + CCNA_01949 0.21 +1.8 2,091,599 + CCNA_01949 0.21 +1.4 2,091,617 + CCNA_01949 0.25 +1.6 2,091,796 + CCNA_01949 0.62 +2.1 2,091,806 + CCNA_01949 0.64 +2.3 2,091,942 + +2.6 2,091,975 + +1.8 2,092,082 + -0.3 2,092,090 - +1.1 2,092,090 - +0.7 2,092,097 - +2.1
Or see this region's nucleotide sequence