Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01920 and CCNA_01921 are separated by 4 nucleotides CCNA_01921 and CCNA_01922 are separated by 23 nucleotides CCNA_01922 and CCNA_01923 are separated by 121 nucleotides
CCNA_01920: CCNA_01920 - transcription-repair coupling factor Mfd, at 2,063,515 to 2,066,982
_01920
CCNA_01921: CCNA_01921 - Sdh5 family flavination protein, at 2,066,987 to 2,067,280
_01921
CCNA_01922: CCNA_01922 - SAM-dependent methyltransferase, at 2,067,304 to 2,068,035
_01922
CCNA_01923: CCNA_01923 - ATP-dependent RNA helicase, at 2,068,157 to 2,069,710
_01923
Position (kb)
2066
2067
2068 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2066.015 kb on - strand, within CCNA_01920 at 2066.049 kb on + strand, within CCNA_01920 at 2066.052 kb on - strand, within CCNA_01920 at 2066.054 kb on + strand, within CCNA_01920 at 2066.067 kb on + strand, within CCNA_01920 at 2066.075 kb on - strand, within CCNA_01920 at 2066.075 kb on - strand, within CCNA_01920 at 2066.075 kb on - strand, within CCNA_01920 at 2066.084 kb on + strand, within CCNA_01920 at 2066.142 kb on - strand, within CCNA_01920 at 2066.202 kb on + strand, within CCNA_01920 at 2066.202 kb on + strand, within CCNA_01920 at 2066.208 kb on - strand, within CCNA_01920 at 2066.208 kb on - strand, within CCNA_01920 at 2066.252 kb on + strand, within CCNA_01920 at 2066.260 kb on - strand, within CCNA_01920 at 2066.325 kb on - strand, within CCNA_01920 at 2066.342 kb on + strand, within CCNA_01920 at 2066.366 kb on + strand, within CCNA_01920 at 2066.425 kb on - strand, within CCNA_01920 at 2066.432 kb on - strand, within CCNA_01920 at 2066.432 kb on - strand, within CCNA_01920 at 2066.432 kb on - strand, within CCNA_01920 at 2066.437 kb on - strand, within CCNA_01920 at 2066.500 kb on + strand, within CCNA_01920 at 2066.527 kb on + strand, within CCNA_01920 at 2066.597 kb on - strand, within CCNA_01920 at 2066.607 kb on + strand, within CCNA_01920 at 2066.610 kb on - strand, within CCNA_01920 at 2066.659 kb on + strand at 2066.666 kb on + strand at 2066.676 kb on + strand at 2066.684 kb on - strand at 2066.684 kb on - strand at 2066.684 kb on - strand at 2066.684 kb on - strand at 2066.684 kb on - strand at 2066.684 kb on - strand at 2066.861 kb on - strand at 2066.894 kb on + strand at 2066.902 kb on - strand at 2066.902 kb on - strand at 2066.907 kb on - strand at 2066.914 kb on + strand at 2066.922 kb on - strand at 2066.922 kb on - strand at 2066.929 kb on + strand at 2067.044 kb on - strand, within CCNA_01921 at 2067.269 kb on + strand at 2067.286 kb on + strand at 2067.299 kb on - strand at 2067.316 kb on - strand at 2067.334 kb on + strand at 2067.334 kb on + strand at 2067.334 kb on + strand at 2067.349 kb on + strand at 2067.352 kb on - strand at 2067.416 kb on - strand, within CCNA_01922 at 2067.603 kb on - strand, within CCNA_01922 at 2067.610 kb on + strand, within CCNA_01922 at 2067.635 kb on - strand, within CCNA_01922 at 2067.732 kb on + strand, within CCNA_01922 at 2067.747 kb on + strand, within CCNA_01922 at 2067.753 kb on - strand, within CCNA_01922 at 2067.768 kb on + strand, within CCNA_01922 at 2067.785 kb on + strand, within CCNA_01922 at 2067.803 kb on - strand, within CCNA_01922 at 2067.807 kb on + strand, within CCNA_01922 at 2067.807 kb on + strand, within CCNA_01922 at 2067.807 kb on + strand, within CCNA_01922 at 2067.811 kb on - strand, within CCNA_01922 at 2067.815 kb on - strand, within CCNA_01922 at 2067.815 kb on - strand, within CCNA_01922 at 2067.825 kb on - strand, within CCNA_01922 at 2067.890 kb on - strand, within CCNA_01922 at 2067.933 kb on + strand, within CCNA_01922 at 2067.940 kb on + strand, within CCNA_01922 at 2067.943 kb on - strand, within CCNA_01922 at 2067.958 kb on - strand, within CCNA_01922 at 2067.958 kb on - strand, within CCNA_01922 at 2067.985 kb on - strand at 2067.985 kb on - strand at 2067.985 kb on - strand at 2068.015 kb on - strand at 2068.038 kb on - strand at 2068.100 kb on + strand at 2068.132 kb on + strand at 2068.145 kb on + strand at 2068.145 kb on + strand at 2068.148 kb on - strand at 2068.186 kb on + strand at 2068.193 kb on + strand at 2068.201 kb on - strand at 2068.217 kb on + strand at 2068.217 kb on + strand at 2068.217 kb on + strand at 2068.217 kb on + strand at 2068.218 kb on + strand at 2068.225 kb on - strand at 2068.233 kb on + strand at 2068.244 kb on + strand at 2068.251 kb on - strand at 2068.271 kb on + strand at 2068.271 kb on + strand at 2068.279 kb on - strand at 2068.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 2,066,015 - CCNA_01920 0.72 -0.3 2,066,049 + CCNA_01920 0.73 +2.0 2,066,052 - CCNA_01920 0.73 +0.4 2,066,054 + CCNA_01920 0.73 -0.5 2,066,067 + CCNA_01920 0.74 -0.5 2,066,075 - CCNA_01920 0.74 -2.0 2,066,075 - CCNA_01920 0.74 -2.2 2,066,075 - CCNA_01920 0.74 +0.1 2,066,084 + CCNA_01920 0.74 -2.5 2,066,142 - CCNA_01920 0.76 +0.3 2,066,202 + CCNA_01920 0.77 -1.2 2,066,202 + CCNA_01920 0.77 -0.2 2,066,208 - CCNA_01920 0.78 +1.1 2,066,208 - CCNA_01920 0.78 +0.1 2,066,252 + CCNA_01920 0.79 -0.5 2,066,260 - CCNA_01920 0.79 -0.3 2,066,325 - CCNA_01920 0.81 -1.0 2,066,342 + CCNA_01920 0.82 -1.3 2,066,366 + CCNA_01920 0.82 +0.3 2,066,425 - CCNA_01920 0.84 +0.5 2,066,432 - CCNA_01920 0.84 -1.1 2,066,432 - CCNA_01920 0.84 +0.5 2,066,432 - CCNA_01920 0.84 -1.4 2,066,437 - CCNA_01920 0.84 -1.5 2,066,500 + CCNA_01920 0.86 +0.7 2,066,527 + CCNA_01920 0.87 -0.8 2,066,597 - CCNA_01920 0.89 -1.2 2,066,607 + CCNA_01920 0.89 +0.4 2,066,610 - CCNA_01920 0.89 +1.3 2,066,659 + -1.6 2,066,666 + -0.1 2,066,676 + -0.4 2,066,684 - -0.3 2,066,684 - +1.3 2,066,684 - +2.0 2,066,684 - +1.4 2,066,684 - +0.4 2,066,684 - +2.3 2,066,861 - +0.6 2,066,894 + -0.2 2,066,902 - +0.8 2,066,902 - -0.5 2,066,907 - -0.3 2,066,914 + -1.7 2,066,922 - +0.6 2,066,922 - -0.6 2,066,929 + +1.1 2,067,044 - CCNA_01921 0.19 +2.2 2,067,269 + +0.8 2,067,286 + +0.3 2,067,299 - +0.5 2,067,316 - +0.9 2,067,334 + -0.7 2,067,334 + -0.2 2,067,334 + +2.4 2,067,349 + +0.1 2,067,352 - +1.1 2,067,416 - CCNA_01922 0.15 -0.3 2,067,603 - CCNA_01922 0.41 -2.2 2,067,610 + CCNA_01922 0.42 -0.0 2,067,635 - CCNA_01922 0.45 +0.8 2,067,732 + CCNA_01922 0.58 +0.4 2,067,747 + CCNA_01922 0.61 +1.9 2,067,753 - CCNA_01922 0.61 +0.1 2,067,768 + CCNA_01922 0.63 +0.5 2,067,785 + CCNA_01922 0.66 +2.9 2,067,803 - CCNA_01922 0.68 -0.8 2,067,807 + CCNA_01922 0.69 -0.8 2,067,807 + CCNA_01922 0.69 +1.1 2,067,807 + CCNA_01922 0.69 -0.3 2,067,811 - CCNA_01922 0.69 -0.5 2,067,815 - CCNA_01922 0.70 +2.7 2,067,815 - CCNA_01922 0.70 -0.5 2,067,825 - CCNA_01922 0.71 +1.0 2,067,890 - CCNA_01922 0.80 -1.3 2,067,933 + CCNA_01922 0.86 +0.1 2,067,940 + CCNA_01922 0.87 -0.3 2,067,943 - CCNA_01922 0.87 +0.7 2,067,958 - CCNA_01922 0.89 -0.8 2,067,958 - CCNA_01922 0.89 +0.1 2,067,985 - +1.0 2,067,985 - -0.7 2,067,985 - -0.7 2,068,015 - -0.4 2,068,038 - -0.9 2,068,100 + +2.1 2,068,132 + +1.4 2,068,145 + +1.9 2,068,145 + +1.5 2,068,148 - +2.3 2,068,186 + +4.2 2,068,193 + +3.5 2,068,201 - -0.8 2,068,217 + +2.3 2,068,217 + +2.2 2,068,217 + +3.1 2,068,217 + +1.4 2,068,218 + +2.5 2,068,225 - -0.4 2,068,233 + +1.3 2,068,244 + +1.9 2,068,251 - +0.9 2,068,271 + +2.0 2,068,271 + +2.3 2,068,279 - -0.6 2,068,279 - -1.0
Or see this region's nucleotide sequence