Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01803 and CCNA_01804 are separated by 18 nucleotides CCNA_01804 and CCNA_01805 are separated by 82 nucleotides
CCNA_01803: CCNA_01803 - pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase component, at 1,926,921 to 1,928,207
_01803
CCNA_01804: CCNA_01804 - glutathione peroxidase, at 1,928,226 to 1,928,708
_01804
CCNA_01805: CCNA_01805 - dihydrolipoamide dehydrogenase, at 1,928,791 to 1,930,191
_01805
Position (kb)
1928
1929 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1928.201 kb on + strand at 1928.201 kb on + strand at 1928.214 kb on - strand at 1928.222 kb on + strand at 1928.230 kb on - strand at 1928.231 kb on - strand at 1928.233 kb on + strand at 1928.323 kb on + strand, within CCNA_01804 at 1928.372 kb on + strand, within CCNA_01804 at 1928.377 kb on - strand, within CCNA_01804 at 1928.380 kb on - strand, within CCNA_01804 at 1928.380 kb on - strand, within CCNA_01804 at 1928.403 kb on + strand, within CCNA_01804 at 1928.403 kb on + strand, within CCNA_01804 at 1928.403 kb on + strand, within CCNA_01804 at 1928.403 kb on + strand, within CCNA_01804 at 1928.403 kb on + strand, within CCNA_01804 at 1928.411 kb on - strand, within CCNA_01804 at 1928.426 kb on + strand, within CCNA_01804 at 1928.431 kb on + strand, within CCNA_01804 at 1928.434 kb on + strand, within CCNA_01804 at 1928.476 kb on - strand, within CCNA_01804 at 1928.480 kb on + strand, within CCNA_01804 at 1928.482 kb on + strand, within CCNA_01804 at 1928.510 kb on - strand, within CCNA_01804 at 1928.544 kb on + strand, within CCNA_01804 at 1928.544 kb on + strand, within CCNA_01804 at 1928.554 kb on - strand, within CCNA_01804 at 1928.554 kb on - strand, within CCNA_01804 at 1928.579 kb on + strand, within CCNA_01804 at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.710 kb on - strand at 1928.710 kb on - strand at 1928.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 1,928,201 + +2.8 1,928,201 + +3.2 1,928,214 - -0.0 1,928,222 + +2.6 1,928,230 - -0.8 1,928,231 - +1.6 1,928,233 + +3.0 1,928,323 + CCNA_01804 0.20 +2.3 1,928,372 + CCNA_01804 0.30 +1.8 1,928,377 - CCNA_01804 0.31 +2.1 1,928,380 - CCNA_01804 0.32 +1.6 1,928,380 - CCNA_01804 0.32 -0.4 1,928,403 + CCNA_01804 0.37 +2.5 1,928,403 + CCNA_01804 0.37 +1.8 1,928,403 + CCNA_01804 0.37 +2.2 1,928,403 + CCNA_01804 0.37 +2.4 1,928,403 + CCNA_01804 0.37 +1.4 1,928,411 - CCNA_01804 0.38 +0.2 1,928,426 + CCNA_01804 0.41 +1.5 1,928,431 + CCNA_01804 0.42 +2.3 1,928,434 + CCNA_01804 0.43 +2.3 1,928,476 - CCNA_01804 0.52 +0.7 1,928,480 + CCNA_01804 0.53 +2.4 1,928,482 + CCNA_01804 0.53 +2.3 1,928,510 - CCNA_01804 0.59 +1.1 1,928,544 + CCNA_01804 0.66 +1.9 1,928,544 + CCNA_01804 0.66 +1.9 1,928,554 - CCNA_01804 0.68 +1.1 1,928,554 - CCNA_01804 0.68 +0.3 1,928,579 + CCNA_01804 0.73 +1.9 1,928,702 + +1.7 1,928,702 + +2.4 1,928,702 + +1.7 1,928,702 + +1.7 1,928,702 + +1.9 1,928,702 + +2.2 1,928,702 + +2.3 1,928,710 - +1.5 1,928,710 - -0.1 1,928,710 - +2.1
Or see this region's nucleotide sequence