Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01193

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01191 and CCNA_01192 overlap by 4 nucleotidesCCNA_01192 and CCNA_01193 overlap by 19 nucleotidesCCNA_01193 and CCNA_01194 are separated by 210 nucleotides CCNA_01191: CCNA_01191 - transporter, major facilitator superfamily, at 1,311,323 to 1,312,558 _01191 CCNA_01192: CCNA_01192 - sugar kinase, at 1,312,555 to 1,313,478 _01192 CCNA_01193: CCNA_01193 - amylosucrase, at 1,313,460 to 1,315,289 _01193 CCNA_01194: CCNA_01194 - TonB-dependent receptor for sucrose and raffinose (SucA) (from data), at 1,315,500 to 1,317,953 _01194 Position (kb) 1313 1314 1315 1316Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1312.552 kb on + strandat 1312.556 kb on - strandat 1312.605 kb on - strandat 1312.618 kb on - strandat 1312.620 kb on + strandat 1312.676 kb on + strand, within CCNA_01192at 1312.686 kb on + strand, within CCNA_01192at 1312.707 kb on - strand, within CCNA_01192at 1312.709 kb on + strand, within CCNA_01192at 1312.730 kb on + strand, within CCNA_01192at 1312.816 kb on - strand, within CCNA_01192at 1312.842 kb on + strand, within CCNA_01192at 1312.849 kb on - strand, within CCNA_01192at 1312.856 kb on + strand, within CCNA_01192at 1312.864 kb on - strand, within CCNA_01192at 1312.912 kb on + strand, within CCNA_01192at 1312.920 kb on - strand, within CCNA_01192at 1312.952 kb on - strand, within CCNA_01192at 1312.963 kb on + strand, within CCNA_01192at 1312.971 kb on - strand, within CCNA_01192at 1312.971 kb on - strand, within CCNA_01192at 1312.989 kb on + strand, within CCNA_01192at 1312.997 kb on - strand, within CCNA_01192at 1312.997 kb on - strand, within CCNA_01192at 1313.046 kb on + strand, within CCNA_01192at 1313.054 kb on - strand, within CCNA_01192at 1313.054 kb on - strand, within CCNA_01192at 1313.094 kb on + strand, within CCNA_01192at 1313.107 kb on + strand, within CCNA_01192at 1313.108 kb on + strand, within CCNA_01192at 1313.116 kb on - strand, within CCNA_01192at 1313.127 kb on + strand, within CCNA_01192at 1313.147 kb on + strand, within CCNA_01192at 1313.148 kb on + strand, within CCNA_01192at 1313.154 kb on - strand, within CCNA_01192at 1313.157 kb on - strand, within CCNA_01192at 1313.181 kb on - strand, within CCNA_01192at 1313.191 kb on - strand, within CCNA_01192at 1313.216 kb on + strand, within CCNA_01192at 1313.235 kb on + strand, within CCNA_01192at 1313.240 kb on + strand, within CCNA_01192at 1313.247 kb on - strand, within CCNA_01192at 1313.255 kb on + strand, within CCNA_01192at 1313.282 kb on - strand, within CCNA_01192at 1313.308 kb on + strand, within CCNA_01192at 1313.316 kb on - strand, within CCNA_01192at 1313.338 kb on - strand, within CCNA_01192at 1313.417 kb on + strandat 1313.568 kb on - strandat 1313.643 kb on + strand, within CCNA_01193at 1313.643 kb on + strand, within CCNA_01193at 1313.651 kb on - strand, within CCNA_01193at 1313.664 kb on - strand, within CCNA_01193at 1313.672 kb on - strand, within CCNA_01193at 1313.693 kb on + strand, within CCNA_01193at 1313.707 kb on - strand, within CCNA_01193at 1313.723 kb on + strand, within CCNA_01193at 1313.727 kb on - strand, within CCNA_01193at 1313.731 kb on - strand, within CCNA_01193at 1313.784 kb on - strand, within CCNA_01193at 1313.807 kb on - strand, within CCNA_01193at 1313.827 kb on - strand, within CCNA_01193at 1313.860 kb on + strand, within CCNA_01193at 1313.876 kb on - strand, within CCNA_01193at 1313.906 kb on - strand, within CCNA_01193at 1313.932 kb on + strand, within CCNA_01193at 1313.984 kb on - strand, within CCNA_01193at 1313.984 kb on - strand, within CCNA_01193at 1313.984 kb on - strand, within CCNA_01193at 1313.997 kb on - strand, within CCNA_01193at 1314.035 kb on + strand, within CCNA_01193at 1314.050 kb on + strand, within CCNA_01193at 1314.077 kb on - strand, within CCNA_01193at 1314.110 kb on - strand, within CCNA_01193at 1314.122 kb on - strand, within CCNA_01193at 1314.152 kb on - strand, within CCNA_01193at 1314.177 kb on - strand, within CCNA_01193at 1314.201 kb on - strand, within CCNA_01193at 1314.201 kb on - strand, within CCNA_01193at 1314.233 kb on + strand, within CCNA_01193at 1314.254 kb on - strand, within CCNA_01193at 1314.290 kb on - strand, within CCNA_01193at 1314.316 kb on - strand, within CCNA_01193at 1314.390 kb on - strand, within CCNA_01193at 1314.486 kb on + strand, within CCNA_01193at 1314.491 kb on + strand, within CCNA_01193at 1314.564 kb on + strand, within CCNA_01193at 1314.564 kb on + strand, within CCNA_01193at 1314.567 kb on - strand, within CCNA_01193at 1314.572 kb on - strand, within CCNA_01193at 1314.572 kb on - strand, within CCNA_01193at 1314.572 kb on - strand, within CCNA_01193at 1314.572 kb on - strand, within CCNA_01193at 1314.572 kb on - strand, within CCNA_01193at 1314.572 kb on - strand, within CCNA_01193at 1314.584 kb on + strand, within CCNA_01193at 1314.584 kb on + strand, within CCNA_01193at 1314.584 kb on + strand, within CCNA_01193at 1314.592 kb on - strand, within CCNA_01193at 1314.592 kb on - strand, within CCNA_01193at 1314.594 kb on + strand, within CCNA_01193at 1314.602 kb on - strand, within CCNA_01193at 1314.602 kb on - strand, within CCNA_01193at 1314.602 kb on - strand, within CCNA_01193at 1314.603 kb on - strand, within CCNA_01193at 1314.631 kb on + strand, within CCNA_01193at 1314.634 kb on - strand, within CCNA_01193at 1314.634 kb on - strand, within CCNA_01193at 1314.747 kb on + strand, within CCNA_01193at 1314.747 kb on + strand, within CCNA_01193at 1314.755 kb on - strand, within CCNA_01193at 1314.757 kb on + strand, within CCNA_01193at 1314.757 kb on + strand, within CCNA_01193at 1314.765 kb on - strand, within CCNA_01193at 1314.791 kb on + strand, within CCNA_01193at 1314.806 kb on + strand, within CCNA_01193at 1314.809 kb on - strand, within CCNA_01193at 1314.809 kb on - strand, within CCNA_01193at 1314.821 kb on + strand, within CCNA_01193at 1314.848 kb on - strand, within CCNA_01193at 1314.849 kb on - strand, within CCNA_01193at 1314.947 kb on + strand, within CCNA_01193at 1314.965 kb on - strand, within CCNA_01193at 1314.979 kb on - strand, within CCNA_01193at 1314.981 kb on + strand, within CCNA_01193at 1315.035 kb on + strand, within CCNA_01193at 1315.043 kb on - strand, within CCNA_01193at 1315.043 kb on - strand, within CCNA_01193at 1315.043 kb on - strand, within CCNA_01193at 1315.049 kb on + strand, within CCNA_01193at 1315.086 kb on - strand, within CCNA_01193at 1315.124 kb on + strandat 1315.129 kb on + strandat 1315.186 kb on + strandat 1315.186 kb on + strandat 1315.186 kb on + strandat 1315.186 kb on - strandat 1315.194 kb on - strandat 1315.194 kb on - strandat 1315.194 kb on - strandat 1315.194 kb on - strandat 1315.224 kb on - strandat 1315.239 kb on + strandat 1315.307 kb on + strandat 1315.307 kb on + strandat 1315.335 kb on + strandat 1315.343 kb on - strandat 1315.589 kb on - strandat 1315.590 kb on + strandat 1315.597 kb on + strandat 1315.729 kb on + strandat 1315.729 kb on + strandat 1315.729 kb on + strandat 1315.734 kb on + strandat 1315.737 kb on - strandat 1315.737 kb on - strandat 1315.737 kb on - strandat 1315.742 kb on - strandat 1315.758 kb on + strand, within CCNA_01194at 1315.760 kb on + strand, within CCNA_01194at 1315.762 kb on - strand, within CCNA_01194at 1315.786 kb on + strand, within CCNA_01194at 1315.799 kb on - strand, within CCNA_01194at 1315.877 kb on - strand, within CCNA_01194at 1315.885 kb on + strand, within CCNA_01194at 1315.891 kb on - strand, within CCNA_01194at 1315.948 kb on + strand, within CCNA_01194at 1315.955 kb on - strand, within CCNA_01194at 1315.956 kb on - strand, within CCNA_01194at 1315.984 kb on - strand, within CCNA_01194at 1316.011 kb on - strand, within CCNA_01194at 1316.039 kb on + strand, within CCNA_01194at 1316.060 kb on + strand, within CCNA_01194at 1316.071 kb on + strand, within CCNA_01194at 1316.079 kb on - strand, within CCNA_01194at 1316.112 kb on - strand, within CCNA_01194at 1316.114 kb on - strand, within CCNA_01194at 1316.125 kb on + strand, within CCNA_01194at 1316.155 kb on + strand, within CCNA_01194at 1316.184 kb on + strand, within CCNA_01194at 1316.192 kb on - strand, within CCNA_01194at 1316.239 kb on + strand, within CCNA_01194at 1316.239 kb on + strand, within CCNA_01194at 1316.239 kb on + strand, within CCNA_01194at 1316.247 kb on - strand, within CCNA_01194

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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1,312,552 + +1.9
1,312,556 - -0.6
1,312,605 - -1.2
1,312,618 - -0.2
1,312,620 + -0.8
1,312,676 + CCNA_01192 0.13 -0.8
1,312,686 + CCNA_01192 0.14 +0.2
1,312,707 - CCNA_01192 0.16 +2.1
1,312,709 + CCNA_01192 0.17 -0.7
1,312,730 + CCNA_01192 0.19 -0.1
1,312,816 - CCNA_01192 0.28 -0.2
1,312,842 + CCNA_01192 0.31 -1.5
1,312,849 - CCNA_01192 0.32 -0.4
1,312,856 + CCNA_01192 0.33 -2.6
1,312,864 - CCNA_01192 0.33 +1.5
1,312,912 + CCNA_01192 0.39 -1.3
1,312,920 - CCNA_01192 0.40 +0.8
1,312,952 - CCNA_01192 0.43 -0.2
1,312,963 + CCNA_01192 0.44 -0.7
1,312,971 - CCNA_01192 0.45 +1.8
1,312,971 - CCNA_01192 0.45 +1.9
1,312,989 + CCNA_01192 0.47 -1.2
1,312,997 - CCNA_01192 0.48 -0.0
1,312,997 - CCNA_01192 0.48 +0.1
1,313,046 + CCNA_01192 0.53 +1.6
1,313,054 - CCNA_01192 0.54 +0.4
1,313,054 - CCNA_01192 0.54 +0.5
1,313,094 + CCNA_01192 0.58 -0.4
1,313,107 + CCNA_01192 0.60 +1.2
1,313,108 + CCNA_01192 0.60 -0.0
1,313,116 - CCNA_01192 0.61 -1.1
1,313,127 + CCNA_01192 0.62 -0.8
1,313,147 + CCNA_01192 0.64 -0.6
1,313,148 + CCNA_01192 0.64 -0.1
1,313,154 - CCNA_01192 0.65 -1.0
1,313,157 - CCNA_01192 0.65 -0.9
1,313,181 - CCNA_01192 0.68 -0.9
1,313,191 - CCNA_01192 0.69 -0.5
1,313,216 + CCNA_01192 0.72 -1.8
1,313,235 + CCNA_01192 0.74 +0.4
1,313,240 + CCNA_01192 0.74 +0.3
1,313,247 - CCNA_01192 0.75 +0.9
1,313,255 + CCNA_01192 0.76 -1.9
1,313,282 - CCNA_01192 0.79 -0.2
1,313,308 + CCNA_01192 0.81 -0.9
1,313,316 - CCNA_01192 0.82 +0.4
1,313,338 - CCNA_01192 0.85 -0.9
1,313,417 + -0.8
1,313,568 - +2.0
1,313,643 + CCNA_01193 0.10 -2.2
1,313,643 + CCNA_01193 0.10 -0.7
1,313,651 - CCNA_01193 0.10 +1.2
1,313,664 - CCNA_01193 0.11 +1.6
1,313,672 - CCNA_01193 0.12 +1.3
1,313,693 + CCNA_01193 0.13 +0.8
1,313,707 - CCNA_01193 0.13 +1.4
1,313,723 + CCNA_01193 0.14 -1.1
1,313,727 - CCNA_01193 0.15 +2.1
1,313,731 - CCNA_01193 0.15 +1.4
1,313,784 - CCNA_01193 0.18 +1.5
1,313,807 - CCNA_01193 0.19 +2.0
1,313,827 - CCNA_01193 0.20 +1.8
1,313,860 + CCNA_01193 0.22 -1.1
1,313,876 - CCNA_01193 0.23 +1.8
1,313,906 - CCNA_01193 0.24 +2.0
1,313,932 + CCNA_01193 0.26 +1.0
1,313,984 - CCNA_01193 0.29 +2.7
1,313,984 - CCNA_01193 0.29 +2.4
1,313,984 - CCNA_01193 0.29 +0.7
1,313,997 - CCNA_01193 0.29 +0.7
1,314,035 + CCNA_01193 0.31 +0.0
1,314,050 + CCNA_01193 0.32 -0.7
1,314,077 - CCNA_01193 0.34 +2.0
1,314,110 - CCNA_01193 0.36 +1.9
1,314,122 - CCNA_01193 0.36 +2.3
1,314,152 - CCNA_01193 0.38 +1.7
1,314,177 - CCNA_01193 0.39 +1.6
1,314,201 - CCNA_01193 0.40 +2.0
1,314,201 - CCNA_01193 0.40 +2.3
1,314,233 + CCNA_01193 0.42 +0.7
1,314,254 - CCNA_01193 0.43 +1.8
1,314,290 - CCNA_01193 0.45 +2.0
1,314,316 - CCNA_01193 0.47 +1.4
1,314,390 - CCNA_01193 0.51 +2.5
1,314,486 + CCNA_01193 0.56 -0.5
1,314,491 + CCNA_01193 0.56 -0.4
1,314,564 + CCNA_01193 0.60 +0.1
1,314,564 + CCNA_01193 0.60 +0.5
1,314,567 - CCNA_01193 0.60 +1.4
1,314,572 - CCNA_01193 0.61 +2.3
1,314,572 - CCNA_01193 0.61 +0.8
1,314,572 - CCNA_01193 0.61 +1.4
1,314,572 - CCNA_01193 0.61 +2.0
1,314,572 - CCNA_01193 0.61 +1.6
1,314,572 - CCNA_01193 0.61 +0.9
1,314,584 + CCNA_01193 0.61 -0.8
1,314,584 + CCNA_01193 0.61 -1.8
1,314,584 + CCNA_01193 0.61 +1.0
1,314,592 - CCNA_01193 0.62 +1.1
1,314,592 - CCNA_01193 0.62 +0.9
1,314,594 + CCNA_01193 0.62 +0.9
1,314,602 - CCNA_01193 0.62 +1.6
1,314,602 - CCNA_01193 0.62 +0.1
1,314,602 - CCNA_01193 0.62 +1.8
1,314,603 - CCNA_01193 0.62 +1.0
1,314,631 + CCNA_01193 0.64 +0.8
1,314,634 - CCNA_01193 0.64 +1.3
1,314,634 - CCNA_01193 0.64 +2.8
1,314,747 + CCNA_01193 0.70 +0.2
1,314,747 + CCNA_01193 0.70 +1.2
1,314,755 - CCNA_01193 0.71 +1.5
1,314,757 + CCNA_01193 0.71 +0.0
1,314,757 + CCNA_01193 0.71 +1.2
1,314,765 - CCNA_01193 0.71 +0.9
1,314,791 + CCNA_01193 0.73 +0.4
1,314,806 + CCNA_01193 0.74 +0.1
1,314,809 - CCNA_01193 0.74 +2.9
1,314,809 - CCNA_01193 0.74 +2.2
1,314,821 + CCNA_01193 0.74 -0.4
1,314,848 - CCNA_01193 0.76 +1.3
1,314,849 - CCNA_01193 0.76 +3.0
1,314,947 + CCNA_01193 0.81 -0.8
1,314,965 - CCNA_01193 0.82 +2.2
1,314,979 - CCNA_01193 0.83 +3.1
1,314,981 + CCNA_01193 0.83 -0.7
1,315,035 + CCNA_01193 0.86 -0.0
1,315,043 - CCNA_01193 0.87 +1.1
1,315,043 - CCNA_01193 0.87 +0.0
1,315,043 - CCNA_01193 0.87 +1.7
1,315,049 + CCNA_01193 0.87 -2.5
1,315,086 - CCNA_01193 0.89 +2.2
1,315,124 + -1.3
1,315,129 + +0.5
1,315,186 + +1.8
1,315,186 + -1.8
1,315,186 + -2.0
1,315,186 - +1.5
1,315,194 - +1.8
1,315,194 - +0.9
1,315,194 - +1.4
1,315,194 - +1.7
1,315,224 - +0.2
1,315,239 + -0.6
1,315,307 + -0.8
1,315,307 + -0.9
1,315,335 + -0.2
1,315,343 - +0.7
1,315,589 - -0.4
1,315,590 + +0.3
1,315,597 + -1.2
1,315,729 + +0.8
1,315,729 + -1.4
1,315,729 + -0.4
1,315,734 + +0.8
1,315,737 - -0.4
1,315,737 - +2.2
1,315,737 - +1.6
1,315,742 - +0.2
1,315,758 + CCNA_01194 0.11 +0.5
1,315,760 + CCNA_01194 0.11 -1.1
1,315,762 - CCNA_01194 0.11 +1.0
1,315,786 + CCNA_01194 0.12 +0.8
1,315,799 - CCNA_01194 0.12 -1.3
1,315,877 - CCNA_01194 0.15 -0.3
1,315,885 + CCNA_01194 0.16 +1.1
1,315,891 - CCNA_01194 0.16 +0.5
1,315,948 + CCNA_01194 0.18 -1.3
1,315,955 - CCNA_01194 0.19 -0.8
1,315,956 - CCNA_01194 0.19 +0.8
1,315,984 - CCNA_01194 0.20 -1.0
1,316,011 - CCNA_01194 0.21 +0.0
1,316,039 + CCNA_01194 0.22 -0.9
1,316,060 + CCNA_01194 0.23 +0.0
1,316,071 + CCNA_01194 0.23 +0.4
1,316,079 - CCNA_01194 0.24 -0.4
1,316,112 - CCNA_01194 0.25 -1.6
1,316,114 - CCNA_01194 0.25 +1.0
1,316,125 + CCNA_01194 0.25 +0.0
1,316,155 + CCNA_01194 0.27 -1.4
1,316,184 + CCNA_01194 0.28 +1.8
1,316,192 - CCNA_01194 0.28 +1.1
1,316,239 + CCNA_01194 0.30 -2.0
1,316,239 + CCNA_01194 0.30 +0.6
1,316,239 + CCNA_01194 0.30 -1.5
1,316,247 - CCNA_01194 0.30 +1.0

Or see this region's nucleotide sequence