Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00964

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
1,038,684	-		CCNA_00962	0.46	+3.2
1,038,780	-		CCNA_00962	0.67	+2.8
1,038,797	-		CCNA_00962	0.71	+2.9
1,038,797	-		CCNA_00962	0.71	+3.3
1,038,797	-		CCNA_00962	0.71	+2.8
1,038,797	-		CCNA_00962	0.71	+2.7
1,038,802	-		CCNA_00962	0.72	+3.7
1,038,802	-		CCNA_00962	0.72	+3.2
1,038,802	-		CCNA_00962	0.72	+3.4
1,038,802	-		CCNA_00962	0.72	+2.5
1,038,859	+		CCNA_00962	0.85	-0.3
1,038,862	-		CCNA_00962	0.85	+3.4
1,038,990	+		CCNA_00963	0.13	-1.4
1,038,995	+		CCNA_00963	0.14	-2.0
1,038,998	-		CCNA_00963	0.15	-0.6
1,039,002	-		CCNA_00963	0.16	-0.6
1,039,026	-		CCNA_00963	0.21	-0.0
1,039,039	-		CCNA_00963	0.24	+1.1
1,039,047	+		CCNA_00963	0.26	-1.2
1,039,047	+		CCNA_00963	0.26	+3.7
1,039,055	+		CCNA_00963	0.28	-1.5
1,039,100	-		CCNA_00963	0.39	-1.6
1,039,106	+		CCNA_00963	0.41	+1.6
1,039,111	+		CCNA_00963	0.42	-2.0
1,039,114	-		CCNA_00963	0.42	-1.0
1,039,116	+		CCNA_00963	0.43	-1.8
1,039,146	+		CCNA_00963	0.50	-0.6
1,039,154	-		CCNA_00963	0.52	-0.5
1,039,168	+		CCNA_00963	0.55	+0.1
1,039,171	-		CCNA_00963	0.56	-0.4
1,039,226	+		CCNA_00963	0.69	+0.6
1,039,226	+		CCNA_00963	0.69	-0.0
1,039,244	-		CCNA_00963	0.74	-1.7
1,039,286	+		CCNA_00963	0.84	-0.1
1,039,297	+		CCNA_00963	0.86	-0.1
1,039,300	-		CCNA_00963	0.87	+1.7
1,039,337	+				-1.0
1,039,337	+				+0.2
1,039,337	+				-1.0
1,039,345	-				-1.1
1,039,345	-				+1.3
1,039,345	-				+1.4
1,039,466	+				-0.9
1,039,506	-				-0.4
1,039,560	+				+2.3
1,039,568	-				+0.9
1,039,568	-				-1.0
1,039,588	-				-0.9
1,039,596	+				-1.4
1,039,654	-				-1.4
1,039,659	-		CCNA_00964	0.12	-2.0
1,039,668	+		CCNA_00964	0.22	-1.2
1,039,668	+		CCNA_00964	0.22	+1.3
1,039,676	-		CCNA_00964	0.30	+0.3
1,039,676	-		CCNA_00964	0.30	-0.2
1,039,698	+		CCNA_00964	0.54	-1.8
1,039,706	-		CCNA_00964	0.62	-1.3
1,039,802	+				-0.9
1,039,810	-				-1.0
1,039,810	-				-0.4
1,039,810	-				+1.6
1,039,810	-				-1.3
1,039,822	+				-0.7
1,039,885	-				-0.2
1,039,885	-				+0.4
1,039,886	+				-0.2
1,039,886	+				-1.0
1,039,894	-				+1.2
1,039,905	+				-1.3
1,039,912	+				-0.6
1,039,912	+				-1.0
1,039,920	-				+0.8
1,039,920	-				+0.8
1,039,942	+				-0.4
1,039,950	-				+1.6
1,039,950	-				+1.0
1,039,950	-				+1.2
1,039,956	+				+0.3
1,039,971	-				+1.5
1,039,994	-		CCNA_00965	0.11	-0.2
1,040,012	+		CCNA_00965	0.14	+0.2
1,040,020	-		CCNA_00965	0.15	-1.0
1,040,029	+		CCNA_00965	0.16	-2.0
1,040,033	+		CCNA_00965	0.17	-2.4
1,040,086	+		CCNA_00965	0.24	+0.1
1,040,089	-		CCNA_00965	0.25	+0.2
1,040,112	-		CCNA_00965	0.28	+1.2
1,040,143	-		CCNA_00965	0.33	+0.7
1,040,167	-		CCNA_00965	0.36	+0.8
1,040,172	+				+2.7
1,040,193	+		CCNA_00965	0.40	-0.5
1,040,223	+		CCNA_00965	0.44	+0.9
1,040,223	+		CCNA_00965	0.44	-2.4
1,040,231	-		CCNA_00965	0.45	-0.7
1,040,237	+		CCNA_00965	0.46	+0.9
1,040,237	+		CCNA_00965	0.46	-0.9
1,040,237	+		CCNA_00965	0.46	-0.5
1,040,245	-		CCNA_00965	0.47	+0.2
1,040,245	-		CCNA_00965	0.47	+0.4
1,040,276	-		CCNA_00965	0.52	+1.1
1,040,316	+		CCNA_00965	0.57	-0.2
1,040,316	-		CCNA_00965	0.57	+0.8
1,040,329	+		CCNA_00965	0.59	-1.0
1,040,362	+		CCNA_00965	0.64	-0.5
1,040,394	-		CCNA_00965	0.69	+1.2
1,040,425	+		CCNA_00965	0.73	-0.6
1,040,425	+		CCNA_00965	0.73	-1.3
1,040,436	+		CCNA_00965	0.75	-0.4
1,040,464	-		CCNA_00965	0.79	-0.5
1,040,474	-		CCNA_00965	0.80	-0.3
1,040,474	-		CCNA_00965	0.80	-0.2
1,040,488	+		CCNA_00965	0.82	-0.5
1,040,488	+		CCNA_00965	0.82	-1.4
1,040,488	+		CCNA_00965	0.82	-0.7
1,040,515	+		CCNA_00965	0.86	-2.1
1,040,522	+		CCNA_00965	0.87	-1.3
1,040,522	+		CCNA_00965	0.87	-1.5
1,040,530	-		CCNA_00965	0.88	-0.4
1,040,530	-		CCNA_00965	0.88	+1.1
1,040,530	-		CCNA_00965	0.88	+0.1
1,040,617	-				-0.5
1,040,636	-				+1.3
1,040,652	+				+0.7
1,040,660	-				-0.6
1,040,703	+				+0.3
1,040,734	+				+1.9
1,040,734	+				+0.8