Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00869 and CCNA_00870 are separated by 65 nucleotides CCNA_00870 and CCNA_00871 are separated by 19 nucleotides CCNA_00871 and CCNA_00872 overlap by 4 nucleotides
CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383
_00869
CCNA_00870: CCNA_00870 - hypothetical protein, at 950,449 to 950,886
_00870
CCNA_00871: CCNA_00871 - carbon-nitrogen hydrolase family protein, at 950,906 to 951,757
_00871
CCNA_00872: CCNA_00872 - glutaredoxin, at 951,754 to 952,008
_00872
Position (kb) 950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 949.469 kb on - strand, within CCNA_00869 at 949.469 kb on - strand, within CCNA_00869 at 949.497 kb on + strand, within CCNA_00869 at 949.546 kb on - strand, within CCNA_00869 at 949.548 kb on + strand at 949.548 kb on + strand, within CCNA_00869 at 949.548 kb on + strand, within CCNA_00869 at 949.582 kb on + strand, within CCNA_00869 at 949.590 kb on - strand, within CCNA_00869 at 949.621 kb on + strand, within CCNA_00869 at 949.643 kb on - strand, within CCNA_00869 at 949.659 kb on + strand, within CCNA_00869 at 949.733 kb on + strand, within CCNA_00869 at 949.866 kb on - strand, within CCNA_00869 at 949.894 kb on - strand, within CCNA_00869 at 949.917 kb on - strand, within CCNA_00869 at 949.930 kb on - strand, within CCNA_00869 at 949.931 kb on - strand, within CCNA_00869 at 949.948 kb on + strand, within CCNA_00869 at 949.957 kb on - strand, within CCNA_00869 at 949.995 kb on - strand, within CCNA_00869 at 950.028 kb on - strand, within CCNA_00869 at 950.033 kb on + strand, within CCNA_00869 at 950.062 kb on - strand, within CCNA_00869 at 950.074 kb on + strand, within CCNA_00869 at 950.104 kb on + strand at 950.114 kb on - strand at 950.114 kb on - strand at 950.123 kb on + strand at 950.131 kb on - strand at 950.131 kb on - strand at 950.154 kb on + strand at 950.154 kb on + strand at 950.196 kb on + strand at 950.224 kb on - strand at 950.224 kb on - strand at 950.225 kb on - strand at 950.241 kb on - strand at 950.310 kb on - strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.379 kb on + strand at 950.381 kb on + strand at 950.386 kb on - strand at 950.406 kb on - strand at 950.408 kb on + strand at 950.416 kb on - strand at 950.450 kb on - strand at 950.452 kb on + strand at 950.455 kb on - strand at 950.480 kb on + strand at 950.484 kb on + strand at 950.495 kb on + strand, within CCNA_00870 at 950.495 kb on + strand, within CCNA_00870 at 950.501 kb on + strand, within CCNA_00870 at 950.518 kb on + strand, within CCNA_00870 at 950.519 kb on + strand, within CCNA_00870 at 950.519 kb on + strand, within CCNA_00870 at 950.527 kb on - strand, within CCNA_00870 at 950.527 kb on - strand, within CCNA_00870 at 950.527 kb on - strand, within CCNA_00870 at 950.593 kb on - strand, within CCNA_00870 at 950.670 kb on - strand, within CCNA_00870 at 950.734 kb on + strand, within CCNA_00870 at 950.741 kb on + strand, within CCNA_00870 at 950.741 kb on + strand, within CCNA_00870 at 950.751 kb on + strand, within CCNA_00870 at 950.751 kb on + strand, within CCNA_00870 at 950.751 kb on + strand, within CCNA_00870 at 950.759 kb on - strand, within CCNA_00870 at 950.777 kb on - strand, within CCNA_00870 at 950.829 kb on + strand, within CCNA_00870 at 950.837 kb on - strand, within CCNA_00870 at 950.859 kb on + strand at 950.884 kb on - strand at 950.887 kb on + strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.903 kb on - strand at 950.905 kb on + strand at 950.923 kb on - strand at 950.936 kb on - strand at 950.941 kb on - strand at 950.967 kb on - strand at 951.014 kb on + strand, within CCNA_00871 at 951.038 kb on + strand, within CCNA_00871 at 951.047 kb on + strand, within CCNA_00871 at 951.062 kb on + strand at 951.062 kb on + strand, within CCNA_00871 at 951.102 kb on + strand, within CCNA_00871 at 951.112 kb on + strand, within CCNA_00871 at 951.120 kb on - strand, within CCNA_00871 at 951.120 kb on - strand, within CCNA_00871 at 951.182 kb on + strand, within CCNA_00871 at 951.182 kb on + strand, within CCNA_00871 at 951.182 kb on + strand, within CCNA_00871 at 951.190 kb on - strand, within CCNA_00871 at 951.218 kb on + strand, within CCNA_00871 at 951.218 kb on + strand, within CCNA_00871 at 951.224 kb on + strand, within CCNA_00871 at 951.226 kb on - strand, within CCNA_00871 at 951.226 kb on - strand, within CCNA_00871 at 951.259 kb on - strand, within CCNA_00871 at 951.269 kb on + strand, within CCNA_00871 at 951.280 kb on + strand, within CCNA_00871 at 951.288 kb on - strand, within CCNA_00871 at 951.294 kb on + strand, within CCNA_00871 at 951.330 kb on + strand, within CCNA_00871 at 951.374 kb on + strand, within CCNA_00871 at 951.379 kb on + strand, within CCNA_00871 at 951.379 kb on + strand, within CCNA_00871 at 951.387 kb on - strand, within CCNA_00871 at 951.393 kb on - strand, within CCNA_00871 at 951.395 kb on - strand, within CCNA_00871 at 951.411 kb on - strand, within CCNA_00871 at 951.444 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.510 kb on + strand, within CCNA_00871 at 951.510 kb on + strand, within CCNA_00871 at 951.550 kb on - strand, within CCNA_00871 at 951.552 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.637 kb on + strand, within CCNA_00871 at 951.665 kb on - strand, within CCNA_00871 at 951.683 kb on + strand at 951.683 kb on + strand at 951.683 kb on + strand at 951.691 kb on - strand at 951.695 kb on + strand at 951.703 kb on - strand at 951.716 kb on + strand at 951.717 kb on + strand at 951.727 kb on + strand at 951.735 kb on - strand at 951.740 kb on - strand at 951.742 kb on + strand at 951.742 kb on + strand at 951.742 kb on + strand at 951.750 kb on - strand at 951.750 kb on - strand at 951.775 kb on - strand at 951.780 kb on - strand, within CCNA_00872 at 951.781 kb on + strand, within CCNA_00872 at 951.805 kb on - strand, within CCNA_00872 at 951.864 kb on - strand, within CCNA_00872
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 949,469 - CCNA_00869 0.69 -0.8 949,469 - CCNA_00869 0.69 +1.2 949,497 + CCNA_00869 0.70 -1.5 949,546 - CCNA_00869 0.72 +0.9 949,548 + +2.9 949,548 + CCNA_00869 0.72 +1.3 949,548 + CCNA_00869 0.72 +0.3 949,582 + CCNA_00869 0.73 -2.2 949,590 - CCNA_00869 0.73 +0.2 949,621 + CCNA_00869 0.74 +1.5 949,643 - CCNA_00869 0.75 -0.8 949,659 + CCNA_00869 0.75 -0.1 949,733 + CCNA_00869 0.78 -0.1 949,866 - CCNA_00869 0.82 +0.5 949,894 - CCNA_00869 0.83 -1.0 949,917 - CCNA_00869 0.84 +0.9 949,930 - CCNA_00869 0.85 +1.9 949,931 - CCNA_00869 0.85 +0.7 949,948 + CCNA_00869 0.85 +2.2 949,957 - CCNA_00869 0.86 +1.2 949,995 - CCNA_00869 0.87 +2.9 950,028 - CCNA_00869 0.88 +0.5 950,033 + CCNA_00869 0.88 -0.2 950,062 - CCNA_00869 0.89 +0.0 950,074 + CCNA_00869 0.90 +0.5 950,104 + -0.5 950,114 - +0.9 950,114 - +1.3 950,123 + +2.3 950,131 - -0.1 950,131 - +0.8 950,154 + +0.3 950,154 + -0.5 950,196 + -0.6 950,224 - +2.3 950,224 - +0.3 950,225 - +0.1 950,241 - -0.6 950,310 - +0.5 950,378 + -0.4 950,378 + -0.7 950,379 + +0.0 950,381 + +0.1 950,386 - -0.0 950,406 - +0.4 950,408 + -1.5 950,416 - +0.5 950,450 - -0.0 950,452 + -0.8 950,455 - +0.4 950,480 + +1.1 950,484 + -2.8 950,495 + CCNA_00870 0.11 +0.0 950,495 + CCNA_00870 0.11 -1.3 950,501 + CCNA_00870 0.12 +0.8 950,518 + CCNA_00870 0.16 +0.3 950,519 + CCNA_00870 0.16 +0.0 950,519 + CCNA_00870 0.16 -0.9 950,527 - CCNA_00870 0.18 +0.6 950,527 - CCNA_00870 0.18 +2.0 950,527 - CCNA_00870 0.18 +0.5 950,593 - CCNA_00870 0.33 +0.7 950,670 - CCNA_00870 0.50 +1.5 950,734 + CCNA_00870 0.65 -0.8 950,741 + CCNA_00870 0.67 -1.0 950,741 + CCNA_00870 0.67 +2.5 950,751 + CCNA_00870 0.69 -0.0 950,751 + CCNA_00870 0.69 -0.7 950,751 + CCNA_00870 0.69 +0.0 950,759 - CCNA_00870 0.71 +1.8 950,777 - CCNA_00870 0.75 +1.5 950,829 + CCNA_00870 0.87 +0.2 950,837 - CCNA_00870 0.89 +1.4 950,859 + -0.6 950,884 - +0.4 950,887 + -0.3 950,895 - +1.2 950,895 - +1.6 950,895 - +1.4 950,903 - -1.4 950,905 + -0.1 950,923 - -0.8 950,936 - +0.8 950,941 - +0.5 950,967 - +0.7 951,014 + CCNA_00871 0.13 +0.3 951,038 + CCNA_00871 0.15 -0.5 951,047 + CCNA_00871 0.17 -2.0 951,062 + +3.9 951,062 + CCNA_00871 0.18 -1.1 951,102 + CCNA_00871 0.23 +0.3 951,112 + CCNA_00871 0.24 -0.5 951,120 - CCNA_00871 0.25 +1.6 951,120 - CCNA_00871 0.25 +1.1 951,182 + CCNA_00871 0.32 -1.0 951,182 + CCNA_00871 0.32 -0.9 951,182 + CCNA_00871 0.32 -0.4 951,190 - CCNA_00871 0.33 +0.2 951,218 + CCNA_00871 0.37 +0.2 951,218 + CCNA_00871 0.37 +1.5 951,224 + CCNA_00871 0.37 -1.6 951,226 - CCNA_00871 0.38 +0.4 951,226 - CCNA_00871 0.38 +1.2 951,259 - CCNA_00871 0.41 +0.9 951,269 + CCNA_00871 0.43 +1.0 951,280 + CCNA_00871 0.44 -0.3 951,288 - CCNA_00871 0.45 -0.5 951,294 + CCNA_00871 0.46 -0.3 951,330 + CCNA_00871 0.50 +0.3 951,374 + CCNA_00871 0.55 +0.0 951,379 + CCNA_00871 0.56 -0.7 951,379 + CCNA_00871 0.56 -1.4 951,387 - CCNA_00871 0.56 -1.0 951,393 - CCNA_00871 0.57 +2.3 951,395 - CCNA_00871 0.57 -1.4 951,411 - CCNA_00871 0.59 -0.9 951,444 + CCNA_00871 0.63 -2.5 951,482 + CCNA_00871 0.68 -0.4 951,510 + CCNA_00871 0.71 +0.5 951,510 + CCNA_00871 0.71 -0.7 951,550 - CCNA_00871 0.76 -0.4 951,552 - CCNA_00871 0.76 +0.7 951,575 - CCNA_00871 0.79 -1.0 951,575 - CCNA_00871 0.79 +1.3 951,575 - CCNA_00871 0.79 +0.0 951,637 + CCNA_00871 0.86 -0.1 951,665 - CCNA_00871 0.89 +0.3 951,683 + -1.0 951,683 + -1.1 951,683 + +0.4 951,691 - +2.4 951,695 + -0.8 951,703 - -0.1 951,716 + +1.5 951,717 + -0.5 951,727 + +1.3 951,735 - +1.1 951,740 - -0.4 951,742 + +0.9 951,742 + +0.6 951,742 + +0.9 951,750 - -1.3 951,750 - +2.3 951,775 - +0.9 951,780 - CCNA_00872 0.10 +2.5 951,781 + CCNA_00872 0.11 +0.8 951,805 - CCNA_00872 0.20 +1.0 951,864 - CCNA_00872 0.43 +1.5
Or see this region's nucleotide sequence