Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00750

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00749 and CCNA_00750 are separated by 208 nucleotidesCCNA_00750 and CCNA_00751 are separated by 370 nucleotides CCNA_00749: CCNA_00749 - ferrous iron transport protein B, at 805,489 to 807,384 _00749 CCNA_00750: CCNA_00750 - FeaR-family transcriptional regulator, at 807,593 to 808,621 _00750 CCNA_00751: CCNA_00751 - hypothetical protein, at 808,992 to 810,233 _00751 Position (kb) 807 808 809Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 807.346 kb on + strandat 807.382 kb on - strandat 807.399 kb on + strandat 807.427 kb on + strandat 807.435 kb on + strandat 807.502 kb on - strandat 807.512 kb on - strandat 807.513 kb on - strandat 807.515 kb on + strandat 807.532 kb on + strandat 807.540 kb on - strandat 807.545 kb on - strandat 807.563 kb on + strandat 807.563 kb on + strandat 807.563 kb on + strandat 807.569 kb on - strandat 807.569 kb on - strandat 807.569 kb on - strandat 807.571 kb on - strandat 807.577 kb on + strandat 807.577 kb on + strandat 807.577 kb on + strandat 807.577 kb on + strandat 807.585 kb on - strandat 807.585 kb on - strandat 807.585 kb on - strandat 807.585 kb on - strandat 807.628 kb on - strandat 807.635 kb on + strandat 807.635 kb on + strandat 807.635 kb on + strandat 807.635 kb on + strandat 807.635 kb on + strandat 807.635 kb on + strandat 807.643 kb on - strandat 807.643 kb on - strandat 807.643 kb on - strandat 807.757 kb on - strand, within CCNA_00750at 807.777 kb on - strand, within CCNA_00750at 807.777 kb on - strand, within CCNA_00750at 807.778 kb on - strand, within CCNA_00750at 807.793 kb on + strand, within CCNA_00750at 807.801 kb on - strand, within CCNA_00750at 807.820 kb on + strand, within CCNA_00750at 807.828 kb on - strand, within CCNA_00750at 807.834 kb on + strand, within CCNA_00750at 807.939 kb on - strandat 807.939 kb on - strand, within CCNA_00750at 807.939 kb on - strand, within CCNA_00750at 808.036 kb on - strand, within CCNA_00750at 808.041 kb on + strand, within CCNA_00750at 808.049 kb on - strand, within CCNA_00750at 808.049 kb on - strand, within CCNA_00750at 808.094 kb on - strand, within CCNA_00750at 808.109 kb on + strand, within CCNA_00750at 808.109 kb on + strand, within CCNA_00750at 808.109 kb on + strand, within CCNA_00750at 808.117 kb on - strand, within CCNA_00750at 808.117 kb on - strand, within CCNA_00750at 808.168 kb on + strand, within CCNA_00750at 808.168 kb on + strand, within CCNA_00750at 808.168 kb on - strand, within CCNA_00750at 808.191 kb on + strand, within CCNA_00750at 808.220 kb on + strand, within CCNA_00750at 808.232 kb on + strand, within CCNA_00750at 808.240 kb on - strand, within CCNA_00750at 808.300 kb on - strand, within CCNA_00750at 808.335 kb on - strand, within CCNA_00750at 808.392 kb on + strand, within CCNA_00750at 808.429 kb on - strand, within CCNA_00750at 808.434 kb on + strand, within CCNA_00750at 808.434 kb on + strand, within CCNA_00750at 808.434 kb on + strand, within CCNA_00750at 808.435 kb on - strand, within CCNA_00750at 808.442 kb on - strand, within CCNA_00750at 808.445 kb on + strand, within CCNA_00750at 808.463 kb on - strand, within CCNA_00750at 808.465 kb on + strand, within CCNA_00750at 808.465 kb on + strand, within CCNA_00750at 808.473 kb on - strand, within CCNA_00750at 808.482 kb on + strand, within CCNA_00750at 808.500 kb on - strand, within CCNA_00750at 808.511 kb on - strand, within CCNA_00750at 808.511 kb on - strand, within CCNA_00750at 808.511 kb on - strand, within CCNA_00750at 808.560 kb on + strandat 808.570 kb on - strandat 808.578 kb on - strandat 808.624 kb on + strandat 808.624 kb on + strandat 808.624 kb on - strandat 808.636 kb on + strandat 808.715 kb on + strandat 808.723 kb on - strandat 808.723 kb on - strandat 808.752 kb on - strandat 808.776 kb on + strandat 808.869 kb on - strandat 808.880 kb on - strandat 808.881 kb on - strandat 808.881 kb on - strandat 808.911 kb on - strandat 808.926 kb on - strandat 808.935 kb on + strandat 808.935 kb on + strandat 808.943 kb on - strandat 808.943 kb on - strandat 808.943 kb on - strandat 808.950 kb on + strandat 808.999 kb on - strandat 809.019 kb on - strandat 809.037 kb on + strandat 809.045 kb on - strandat 809.053 kb on - strandat 809.071 kb on + strandat 809.078 kb on + strandat 809.083 kb on + strandat 809.121 kb on + strand, within CCNA_00751at 809.124 kb on + strand, within CCNA_00751at 809.129 kb on - strand, within CCNA_00751at 809.129 kb on - strand, within CCNA_00751at 809.130 kb on - strand, within CCNA_00751at 809.136 kb on - strand, within CCNA_00751at 809.137 kb on - strand, within CCNA_00751at 809.137 kb on - strand, within CCNA_00751at 809.137 kb on - strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.159 kb on - strand, within CCNA_00751at 809.162 kb on + strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.170 kb on - strandat 809.181 kb on - strand, within CCNA_00751at 809.204 kb on + strand, within CCNA_00751at 809.206 kb on + strand, within CCNA_00751at 809.212 kb on - strand, within CCNA_00751at 809.248 kb on + strand, within CCNA_00751at 809.248 kb on + strand, within CCNA_00751at 809.258 kb on - strand, within CCNA_00751at 809.327 kb on - strand, within CCNA_00751at 809.334 kb on + strand, within CCNA_00751at 809.362 kb on + strand, within CCNA_00751at 809.390 kb on + strand, within CCNA_00751at 809.398 kb on - strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.426 kb on - strand, within CCNA_00751at 809.426 kb on - strand, within CCNA_00751at 809.431 kb on - strand, within CCNA_00751at 809.431 kb on - strand, within CCNA_00751at 809.455 kb on - strand, within CCNA_00751at 809.458 kb on + strand, within CCNA_00751at 809.458 kb on + strand, within CCNA_00751at 809.472 kb on - strand, within CCNA_00751at 809.472 kb on - strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.496 kb on + strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.501 kb on + strand, within CCNA_00751at 809.516 kb on + strand, within CCNA_00751at 809.599 kb on + strand, within CCNA_00751at 809.617 kb on - strand, within CCNA_00751

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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807,346 + +1.6
807,382 - -0.7
807,399 + +2.0
807,427 + +1.4
807,435 + +0.9
807,502 - +0.9
807,512 - +0.1
807,513 - -0.1
807,515 + +0.3
807,532 + +0.4
807,540 - -0.6
807,545 - +0.8
807,563 + +0.5
807,563 + -0.4
807,563 + -0.5
807,569 - +1.6
807,569 - +0.8
807,569 - +0.5
807,571 - +1.2
807,577 + +0.6
807,577 + -0.9
807,577 + -0.0
807,577 + +0.2
807,585 - +0.9
807,585 - -0.1
807,585 - +1.5
807,585 - +1.2
807,628 - +2.5
807,635 + +0.4
807,635 + -0.3
807,635 + +1.8
807,635 + -0.2
807,635 + -2.4
807,635 + +0.6
807,643 - +1.6
807,643 - +1.6
807,643 - +2.3
807,757 - CCNA_00750 0.16 +2.0
807,777 - CCNA_00750 0.18 +1.5
807,777 - CCNA_00750 0.18 +1.9
807,778 - CCNA_00750 0.18 +1.5
807,793 + CCNA_00750 0.19 +0.7
807,801 - CCNA_00750 0.20 +0.7
807,820 + CCNA_00750 0.22 -0.5
807,828 - CCNA_00750 0.23 +1.5
807,834 + CCNA_00750 0.23 +1.6
807,939 - +2.4
807,939 - CCNA_00750 0.34 +1.9
807,939 - CCNA_00750 0.34 +1.3
808,036 - CCNA_00750 0.43 +1.5
808,041 + CCNA_00750 0.44 -0.6
808,049 - CCNA_00750 0.44 +2.9
808,049 - CCNA_00750 0.44 +1.4
808,094 - CCNA_00750 0.49 +1.1
808,109 + CCNA_00750 0.50 -0.3
808,109 + CCNA_00750 0.50 -1.3
808,109 + CCNA_00750 0.50 -1.0
808,117 - CCNA_00750 0.51 +1.7
808,117 - CCNA_00750 0.51 +1.3
808,168 + CCNA_00750 0.56 -1.1
808,168 + CCNA_00750 0.56 -0.4
808,168 - CCNA_00750 0.56 +1.5
808,191 + CCNA_00750 0.58 -1.2
808,220 + CCNA_00750 0.61 -1.1
808,232 + CCNA_00750 0.62 -0.3
808,240 - CCNA_00750 0.63 +1.5
808,300 - CCNA_00750 0.69 +1.8
808,335 - CCNA_00750 0.72 +1.1
808,392 + CCNA_00750 0.78 +0.7
808,429 - CCNA_00750 0.81 +1.4
808,434 + CCNA_00750 0.82 -0.3
808,434 + CCNA_00750 0.82 +1.8
808,434 + CCNA_00750 0.82 +0.5
808,435 - CCNA_00750 0.82 +1.2
808,442 - CCNA_00750 0.83 +4.0
808,445 + CCNA_00750 0.83 -0.7
808,463 - CCNA_00750 0.85 +1.8
808,465 + CCNA_00750 0.85 -0.3
808,465 + CCNA_00750 0.85 -1.1
808,473 - CCNA_00750 0.86 +2.0
808,482 + CCNA_00750 0.86 +0.8
808,500 - CCNA_00750 0.88 +0.5
808,511 - CCNA_00750 0.89 +1.7
808,511 - CCNA_00750 0.89 +0.7
808,511 - CCNA_00750 0.89 +1.1
808,560 + +0.3
808,570 - +1.3
808,578 - +2.2
808,624 + +0.8
808,624 + -0.8
808,624 - +1.4
808,636 + +0.3
808,715 + +0.6
808,723 - +1.0
808,723 - -0.1
808,752 - +1.1
808,776 + +1.5
808,869 - -0.2
808,880 - +1.7
808,881 - -0.3
808,881 - -1.9
808,911 - -1.4
808,926 - +1.6
808,935 + -0.7
808,935 + +0.4
808,943 - +1.0
808,943 - +2.8
808,943 - +1.1
808,950 + +3.2
808,999 - +1.9
809,019 - +1.1
809,037 + -0.0
809,045 - +0.2
809,053 - +1.4
809,071 + -0.7
809,078 + +1.7
809,083 + -0.5
809,121 + CCNA_00751 0.10 +2.6
809,124 + CCNA_00751 0.11 -0.3
809,129 - CCNA_00751 0.11 +0.4
809,129 - CCNA_00751 0.11 +0.9
809,130 - CCNA_00751 0.11 +1.7
809,136 - CCNA_00751 0.12 +2.3
809,137 - CCNA_00751 0.12 +1.1
809,137 - CCNA_00751 0.12 +0.7
809,137 - CCNA_00751 0.12 +0.6
809,156 + CCNA_00751 0.13 -0.3
809,156 + CCNA_00751 0.13 -0.5
809,156 + CCNA_00751 0.13 -1.5
809,156 + CCNA_00751 0.13 +0.8
809,156 + CCNA_00751 0.13 -0.7
809,159 - CCNA_00751 0.13 +1.5
809,162 + CCNA_00751 0.14 -0.5
809,164 - CCNA_00751 0.14 -1.5
809,164 - CCNA_00751 0.14 +1.0
809,164 - CCNA_00751 0.14 +1.0
809,164 - CCNA_00751 0.14 +1.5
809,170 - +2.0
809,181 - CCNA_00751 0.15 +0.8
809,204 + CCNA_00751 0.17 -0.2
809,206 + CCNA_00751 0.17 -1.5
809,212 - CCNA_00751 0.18 +0.8
809,248 + CCNA_00751 0.21 +0.7
809,248 + CCNA_00751 0.21 +1.4
809,258 - CCNA_00751 0.21 +1.2
809,327 - CCNA_00751 0.27 +0.5
809,334 + CCNA_00751 0.28 +0.2
809,362 + CCNA_00751 0.30 -1.0
809,390 + CCNA_00751 0.32 -1.6
809,398 - CCNA_00751 0.33 +0.7
809,413 + CCNA_00751 0.34 +0.6
809,413 + CCNA_00751 0.34 +0.3
809,418 + CCNA_00751 0.34 +1.4
809,418 + CCNA_00751 0.34 +0.1
809,418 + CCNA_00751 0.34 +1.7
809,421 - CCNA_00751 0.35 +0.3
809,421 - CCNA_00751 0.35 +0.2
809,421 - CCNA_00751 0.35 +0.1
809,426 - CCNA_00751 0.35 -0.7
809,426 - CCNA_00751 0.35 +0.8
809,431 - CCNA_00751 0.35 +0.7
809,431 - CCNA_00751 0.35 +0.9
809,455 - CCNA_00751 0.37 +0.5
809,458 + CCNA_00751 0.38 -0.3
809,458 + CCNA_00751 0.38 -0.7
809,472 - CCNA_00751 0.39 +0.7
809,472 - CCNA_00751 0.39 +0.0
809,491 + CCNA_00751 0.40 +2.4
809,491 + CCNA_00751 0.40 +1.3
809,491 + CCNA_00751 0.40 +0.7
809,491 + CCNA_00751 0.40 +1.0
809,491 + CCNA_00751 0.40 -1.0
809,496 + CCNA_00751 0.41 -1.5
809,499 - CCNA_00751 0.41 +2.1
809,499 - CCNA_00751 0.41 -1.5
809,501 + CCNA_00751 0.41 +0.2
809,516 + CCNA_00751 0.42 +1.2
809,599 + CCNA_00751 0.49 +0.7
809,617 - CCNA_00751 0.50 +0.3

Or see this region's nucleotide sequence