Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00407

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00405 and CCNA_00406 are separated by 101 nucleotidesCCNA_00406 and CCNA_00407 overlap by 11 nucleotidesCCNA_00407 and CCNA_00408 are separated by 32 nucleotides CCNA_00405: CCNA_00405 - short chain dehydrogenase, at 421,211 to 422,068 _00405 CCNA_00406: CCNA_00406 - DNA transformation protein tfoX, at 422,170 to 422,538 _00406 CCNA_00407: CCNA_00407 - acetyltransferase, at 422,528 to 423,007 _00407 CCNA_00408: CCNA_00408 - antiporter protein, at 423,040 to 424,308 _00408 Position (kb) 422 423 424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 421.545 kb on + strand, within CCNA_00405at 421.567 kb on - strand, within CCNA_00405at 421.597 kb on + strand, within CCNA_00405at 421.598 kb on - strand, within CCNA_00405at 421.610 kb on + strand, within CCNA_00405at 421.627 kb on + strand, within CCNA_00405at 421.646 kb on - strand, within CCNA_00405at 421.646 kb on - strand, within CCNA_00405at 421.660 kb on + strand, within CCNA_00405at 421.694 kb on + strand, within CCNA_00405at 421.694 kb on + strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.735 kb on + strand, within CCNA_00405at 421.742 kb on + strand, within CCNA_00405at 421.742 kb on + strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.750 kb on + strand, within CCNA_00405at 421.758 kb on - strand, within CCNA_00405at 421.758 kb on - strand, within CCNA_00405at 421.826 kb on - strand, within CCNA_00405at 421.831 kb on - strand, within CCNA_00405at 421.831 kb on - strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.867 kb on + strand, within CCNA_00405at 421.870 kb on - strand, within CCNA_00405at 421.883 kb on + strand, within CCNA_00405at 421.912 kb on + strand, within CCNA_00405at 421.971 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.989 kb on - strandat 422.035 kb on - strandat 422.068 kb on + strandat 422.085 kb on - strandat 422.092 kb on + strandat 422.100 kb on - strandat 422.101 kb on - strandat 422.101 kb on - strandat 422.113 kb on + strandat 422.113 kb on + strandat 422.113 kb on + strandat 422.186 kb on - strandat 422.191 kb on + strandat 422.248 kb on + strand, within CCNA_00406at 422.259 kb on + strandat 422.267 kb on - strand, within CCNA_00406at 422.268 kb on - strand, within CCNA_00406at 422.291 kb on + strand, within CCNA_00406at 422.291 kb on + strand, within CCNA_00406at 422.291 kb on + strand, within CCNA_00406at 422.299 kb on - strand, within CCNA_00406at 422.299 kb on - strand, within CCNA_00406at 422.300 kb on + strand, within CCNA_00406at 422.308 kb on - strand, within CCNA_00406at 422.308 kb on - strand, within CCNA_00406at 422.314 kb on - strand, within CCNA_00406at 422.314 kb on - strand, within CCNA_00406at 422.315 kb on + strand, within CCNA_00406at 422.325 kb on - strand, within CCNA_00406at 422.333 kb on - strand, within CCNA_00406at 422.333 kb on - strand, within CCNA_00406at 422.362 kb on + strand, within CCNA_00406at 422.368 kb on - strand, within CCNA_00406at 422.370 kb on - strand, within CCNA_00406at 422.419 kb on - strand, within CCNA_00406at 422.419 kb on - strand, within CCNA_00406at 422.424 kb on - strand, within CCNA_00406at 422.442 kb on - strand, within CCNA_00406at 422.442 kb on - strand, within CCNA_00406at 422.462 kb on + strand, within CCNA_00406at 422.462 kb on + strand, within CCNA_00406at 422.470 kb on - strandat 422.470 kb on - strand, within CCNA_00406at 422.503 kb on + strandat 422.557 kb on + strandat 422.581 kb on + strand, within CCNA_00407at 422.586 kb on + strand, within CCNA_00407at 422.596 kb on + strand, within CCNA_00407at 422.614 kb on + strand, within CCNA_00407at 422.622 kb on - strand, within CCNA_00407at 422.622 kb on - strand, within CCNA_00407at 422.622 kb on - strand, within CCNA_00407at 422.622 kb on - strand, within CCNA_00407at 422.624 kb on + strand, within CCNA_00407at 422.624 kb on + strand, within CCNA_00407at 422.649 kb on + strand, within CCNA_00407at 422.656 kb on - strand, within CCNA_00407at 422.662 kb on - strand, within CCNA_00407at 422.718 kb on + strand, within CCNA_00407at 422.726 kb on - strand, within CCNA_00407at 422.726 kb on - strand, within CCNA_00407at 422.731 kb on + strand, within CCNA_00407at 422.742 kb on + strand, within CCNA_00407at 422.772 kb on + strand, within CCNA_00407at 422.772 kb on + strand, within CCNA_00407at 422.774 kb on - strand, within CCNA_00407at 422.783 kb on - strand, within CCNA_00407at 422.808 kb on + strand, within CCNA_00407at 422.813 kb on + strand, within CCNA_00407at 422.814 kb on - strand, within CCNA_00407at 422.816 kb on - strand, within CCNA_00407at 422.872 kb on - strand, within CCNA_00407at 422.872 kb on - strand, within CCNA_00407at 422.872 kb on - strandat 422.872 kb on - strand, within CCNA_00407at 422.872 kb on - strand, within CCNA_00407at 422.872 kb on - strand, within CCNA_00407at 422.888 kb on + strand, within CCNA_00407at 422.896 kb on - strand, within CCNA_00407at 422.896 kb on - strand, within CCNA_00407at 422.896 kb on - strand, within CCNA_00407at 422.924 kb on - strand, within CCNA_00407at 422.958 kb on - strand, within CCNA_00407at 422.959 kb on - strand, within CCNA_00407at 423.001 kb on + strandat 423.009 kb on - strandat 423.009 kb on - strandat 423.025 kb on - strandat 423.037 kb on + strandat 423.037 kb on + strandat 423.037 kb on + strandat 423.045 kb on - strandat 423.045 kb on - strandat 423.066 kb on + strandat 423.074 kb on - strandat 423.158 kb on - strandat 423.162 kb on - strandat 423.166 kb on + strandat 423.166 kb on + strandat 423.174 kb on - strand, within CCNA_00408at 423.174 kb on - strand, within CCNA_00408at 423.258 kb on + strand, within CCNA_00408at 423.258 kb on + strand, within CCNA_00408at 423.276 kb on + strand, within CCNA_00408at 423.276 kb on + strand, within CCNA_00408at 423.289 kb on - strand, within CCNA_00408at 423.301 kb on + strand, within CCNA_00408at 423.309 kb on - strand, within CCNA_00408at 423.314 kb on - strand, within CCNA_00408at 423.332 kb on - strand, within CCNA_00408at 423.337 kb on - strand, within CCNA_00408at 423.346 kb on - strand, within CCNA_00408at 423.346 kb on - strand, within CCNA_00408at 423.346 kb on - strand, within CCNA_00408at 423.346 kb on - strand, within CCNA_00408at 423.358 kb on - strand, within CCNA_00408at 423.400 kb on - strand, within CCNA_00408at 423.400 kb on - strand, within CCNA_00408at 423.435 kb on + strand, within CCNA_00408at 423.458 kb on - strand, within CCNA_00408at 423.473 kb on + strand, within CCNA_00408at 423.478 kb on + strand, within CCNA_00408at 423.481 kb on - strand, within CCNA_00408at 423.483 kb on + strand, within CCNA_00408at 423.483 kb on + strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.505 kb on + strand, within CCNA_00408at 423.505 kb on - strand, within CCNA_00408at 423.513 kb on - strand, within CCNA_00408at 423.513 kb on - strand, within CCNA_00408at 423.558 kb on - strand, within CCNA_00408at 423.558 kb on - strand, within CCNA_00408at 423.570 kb on + strand, within CCNA_00408at 423.578 kb on - strand, within CCNA_00408at 423.591 kb on + strand, within CCNA_00408at 423.596 kb on + strand, within CCNA_00408at 423.626 kb on + strand, within CCNA_00408at 423.626 kb on + strand, within CCNA_00408at 423.626 kb on + strandat 423.626 kb on + strand, within CCNA_00408at 423.626 kb on + strand, within CCNA_00408at 423.634 kb on - strand, within CCNA_00408at 423.634 kb on - strand, within CCNA_00408at 423.634 kb on - strand, within CCNA_00408at 423.673 kb on - strand, within CCNA_00408at 423.680 kb on + strand, within CCNA_00408at 423.699 kb on - strand, within CCNA_00408at 423.707 kb on + strand, within CCNA_00408at 423.711 kb on + strand, within CCNA_00408at 423.711 kb on + strand, within CCNA_00408at 423.711 kb on + strand, within CCNA_00408at 423.719 kb on - strand, within CCNA_00408at 423.719 kb on - strand, within CCNA_00408at 423.719 kb on - strand, within CCNA_00408at 423.719 kb on - strand, within CCNA_00408at 423.736 kb on + strand, within CCNA_00408at 423.738 kb on - strand, within CCNA_00408at 423.772 kb on - strand, within CCNA_00408at 423.800 kb on + strand, within CCNA_00408at 423.800 kb on + strand, within CCNA_00408at 423.808 kb on - strand, within CCNA_00408at 423.822 kb on - strand, within CCNA_00408at 423.856 kb on + strand, within CCNA_00408at 423.912 kb on + strand, within CCNA_00408at 423.951 kb on - strand, within CCNA_00408at 423.958 kb on + strand, within CCNA_00408at 423.966 kb on - strand, within CCNA_00408at 423.973 kb on - strand, within CCNA_00408at 423.975 kb on + strand, within CCNA_00408at 423.975 kb on + strand, within CCNA_00408at 423.996 kb on + strand, within CCNA_00408at 424.002 kb on + strand, within CCNA_00408

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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421,545 + CCNA_00405 0.39 -0.4
421,567 - CCNA_00405 0.41 -1.2
421,597 + CCNA_00405 0.45 -2.2
421,598 - CCNA_00405 0.45 +0.4
421,610 + CCNA_00405 0.47 -0.5
421,627 + CCNA_00405 0.48 -2.0
421,646 - CCNA_00405 0.51 +0.5
421,646 - CCNA_00405 0.51 -2.9
421,660 + CCNA_00405 0.52 +0.5
421,694 + CCNA_00405 0.56 -1.2
421,694 + CCNA_00405 0.56 -1.7
421,702 - CCNA_00405 0.57 -0.5
421,702 - CCNA_00405 0.57 -2.3
421,702 - CCNA_00405 0.57 -0.8
421,702 - CCNA_00405 0.57 +0.7
421,735 + CCNA_00405 0.61 -0.3
421,742 + CCNA_00405 0.62 -1.7
421,742 + CCNA_00405 0.62 -1.6
421,743 - CCNA_00405 0.62 +0.2
421,743 - CCNA_00405 0.62 -0.5
421,743 - CCNA_00405 0.62 -0.7
421,743 - CCNA_00405 0.62 -0.8
421,750 + CCNA_00405 0.63 +0.2
421,758 - CCNA_00405 0.64 -3.4
421,758 - CCNA_00405 0.64 -1.7
421,826 - CCNA_00405 0.72 +0.7
421,831 - CCNA_00405 0.72 -0.3
421,831 - CCNA_00405 0.72 -0.1
421,862 + CCNA_00405 0.76 +0.6
421,862 + CCNA_00405 0.76 -0.3
421,862 + CCNA_00405 0.76 -1.5
421,867 + CCNA_00405 0.76 -0.0
421,870 - CCNA_00405 0.77 -1.0
421,883 + CCNA_00405 0.78 -1.8
421,912 + CCNA_00405 0.82 +0.5
421,971 + CCNA_00405 0.89 -0.4
421,981 + CCNA_00405 0.90 -1.7
421,981 + CCNA_00405 0.90 -0.4
421,981 + CCNA_00405 0.90 -1.9
421,981 + CCNA_00405 0.90 -0.9
421,981 + CCNA_00405 0.90 -0.9
421,981 + CCNA_00405 0.90 -1.5
421,981 + CCNA_00405 0.90 -0.3
421,981 + CCNA_00405 0.90 -0.1
421,981 + CCNA_00405 0.90 -0.3
421,989 - +0.8
422,035 - +1.2
422,068 + -1.5
422,085 - +0.3
422,092 + +0.3
422,100 - -1.2
422,101 - +0.6
422,101 - -2.2
422,113 + -0.6
422,113 + +0.3
422,113 + -0.7
422,186 - -2.2
422,191 + -0.3
422,248 + CCNA_00406 0.21 -2.6
422,259 + +1.2
422,267 - CCNA_00406 0.26 +1.8
422,268 - CCNA_00406 0.27 +0.5
422,291 + CCNA_00406 0.33 +0.2
422,291 + CCNA_00406 0.33 -0.7
422,291 + CCNA_00406 0.33 +0.9
422,299 - CCNA_00406 0.35 +0.0
422,299 - CCNA_00406 0.35 +1.4
422,300 + CCNA_00406 0.35 -0.3
422,308 - CCNA_00406 0.37 -0.1
422,308 - CCNA_00406 0.37 -0.8
422,314 - CCNA_00406 0.39 -2.3
422,314 - CCNA_00406 0.39 -0.9
422,315 + CCNA_00406 0.39 +1.0
422,325 - CCNA_00406 0.42 -1.1
422,333 - CCNA_00406 0.44 +0.6
422,333 - CCNA_00406 0.44 -1.0
422,362 + CCNA_00406 0.52 +0.2
422,368 - CCNA_00406 0.54 +0.3
422,370 - CCNA_00406 0.54 -2.2
422,419 - CCNA_00406 0.67 -1.2
422,419 - CCNA_00406 0.67 -1.9
422,424 - CCNA_00406 0.69 +0.5
422,442 - CCNA_00406 0.74 -1.0
422,442 - CCNA_00406 0.74 -0.7
422,462 + CCNA_00406 0.79 -2.2
422,462 + CCNA_00406 0.79 +0.2
422,470 - +3.5
422,470 - CCNA_00406 0.81 -2.3
422,503 + -1.2
422,557 + +0.7
422,581 + CCNA_00407 0.11 -0.8
422,586 + CCNA_00407 0.12 +1.3
422,596 + CCNA_00407 0.14 +0.5
422,614 + CCNA_00407 0.18 -1.7
422,622 - CCNA_00407 0.20 +0.6
422,622 - CCNA_00407 0.20 -1.0
422,622 - CCNA_00407 0.20 -0.1
422,622 - CCNA_00407 0.20 -0.6
422,624 + CCNA_00407 0.20 -1.1
422,624 + CCNA_00407 0.20 +0.5
422,649 + CCNA_00407 0.25 +1.1
422,656 - CCNA_00407 0.27 -0.7
422,662 - CCNA_00407 0.28 -0.8
422,718 + CCNA_00407 0.40 +1.2
422,726 - CCNA_00407 0.41 -1.0
422,726 - CCNA_00407 0.41 -1.1
422,731 + CCNA_00407 0.42 -1.4
422,742 + CCNA_00407 0.45 -0.6
422,772 + CCNA_00407 0.51 -0.1
422,772 + CCNA_00407 0.51 -1.0
422,774 - CCNA_00407 0.51 -1.1
422,783 - CCNA_00407 0.53 +0.4
422,808 + CCNA_00407 0.58 -0.7
422,813 + CCNA_00407 0.59 -1.9
422,814 - CCNA_00407 0.60 +0.0
422,816 - CCNA_00407 0.60 -0.0
422,872 - CCNA_00407 0.72 -0.8
422,872 - CCNA_00407 0.72 -0.4
422,872 - +0.7
422,872 - CCNA_00407 0.72 -1.4
422,872 - CCNA_00407 0.72 -1.3
422,872 - CCNA_00407 0.72 -2.1
422,888 + CCNA_00407 0.75 +0.0
422,896 - CCNA_00407 0.77 +1.1
422,896 - CCNA_00407 0.77 +0.5
422,896 - CCNA_00407 0.77 +0.7
422,924 - CCNA_00407 0.82 -0.7
422,958 - CCNA_00407 0.90 -0.1
422,959 - CCNA_00407 0.90 -1.2
423,001 + -1.2
423,009 - -0.6
423,009 - +0.2
423,025 - +0.6
423,037 + +1.5
423,037 + -1.7
423,037 + -0.4
423,045 - +0.5
423,045 - -1.0
423,066 + +0.6
423,074 - -1.7
423,158 - +0.9
423,162 - +0.1
423,166 + +0.0
423,166 + -1.0
423,174 - CCNA_00408 0.11 +0.1
423,174 - CCNA_00408 0.11 +0.2
423,258 + CCNA_00408 0.17 +0.2
423,258 + CCNA_00408 0.17 -0.8
423,276 + CCNA_00408 0.19 +1.2
423,276 + CCNA_00408 0.19 +0.3
423,289 - CCNA_00408 0.20 -0.6
423,301 + CCNA_00408 0.21 +0.2
423,309 - CCNA_00408 0.21 +0.4
423,314 - CCNA_00408 0.22 +2.9
423,332 - CCNA_00408 0.23 -1.3
423,337 - CCNA_00408 0.23 -0.9
423,346 - CCNA_00408 0.24 +0.2
423,346 - CCNA_00408 0.24 -0.9
423,346 - CCNA_00408 0.24 -2.6
423,346 - CCNA_00408 0.24 -0.5
423,358 - CCNA_00408 0.25 -2.2
423,400 - CCNA_00408 0.28 -1.4
423,400 - CCNA_00408 0.28 -0.9
423,435 + CCNA_00408 0.31 +0.5
423,458 - CCNA_00408 0.33 +0.3
423,473 + CCNA_00408 0.34 -0.2
423,478 + CCNA_00408 0.35 -0.3
423,481 - CCNA_00408 0.35 -1.2
423,483 + CCNA_00408 0.35 -1.4
423,483 + CCNA_00408 0.35 -0.1
423,491 - CCNA_00408 0.36 -1.6
423,491 - CCNA_00408 0.36 -0.5
423,491 - CCNA_00408 0.36 -1.3
423,491 - CCNA_00408 0.36 -1.5
423,505 + CCNA_00408 0.37 -1.9
423,505 - CCNA_00408 0.37 -0.2
423,513 - CCNA_00408 0.37 +0.5
423,513 - CCNA_00408 0.37 -0.4
423,558 - CCNA_00408 0.41 -0.1
423,558 - CCNA_00408 0.41 -1.8
423,570 + CCNA_00408 0.42 +0.0
423,578 - CCNA_00408 0.42 -0.2
423,591 + CCNA_00408 0.43 -2.0
423,596 + CCNA_00408 0.44 -0.1
423,626 + CCNA_00408 0.46 -2.3
423,626 + CCNA_00408 0.46 -1.8
423,626 + +1.9
423,626 + CCNA_00408 0.46 +0.5
423,626 + CCNA_00408 0.46 +0.2
423,634 - CCNA_00408 0.47 -0.4
423,634 - CCNA_00408 0.47 +0.7
423,634 - CCNA_00408 0.47 -1.6
423,673 - CCNA_00408 0.50 -2.6
423,680 + CCNA_00408 0.50 -0.1
423,699 - CCNA_00408 0.52 -1.0
423,707 + CCNA_00408 0.53 -1.1
423,711 + CCNA_00408 0.53 -0.6
423,711 + CCNA_00408 0.53 -2.5
423,711 + CCNA_00408 0.53 -0.7
423,719 - CCNA_00408 0.54 +1.3
423,719 - CCNA_00408 0.54 -1.1
423,719 - CCNA_00408 0.54 -0.8
423,719 - CCNA_00408 0.54 -1.6
423,736 + CCNA_00408 0.55 -0.8
423,738 - CCNA_00408 0.55 +0.4
423,772 - CCNA_00408 0.58 -0.1
423,800 + CCNA_00408 0.60 -2.0
423,800 + CCNA_00408 0.60 -4.1
423,808 - CCNA_00408 0.61 +0.9
423,822 - CCNA_00408 0.62 -0.2
423,856 + CCNA_00408 0.64 -0.7
423,912 + CCNA_00408 0.69 -1.1
423,951 - CCNA_00408 0.72 +0.6
423,958 + CCNA_00408 0.72 -1.2
423,966 - CCNA_00408 0.73 -2.2
423,973 - CCNA_00408 0.74 -0.5
423,975 + CCNA_00408 0.74 -2.5
423,975 + CCNA_00408 0.74 -1.3
423,996 + CCNA_00408 0.75 -0.8
424,002 + CCNA_00408 0.76 -3.4

Or see this region's nucleotide sequence