Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00385 and CCNA_00386 overlap by 4 nucleotides CCNA_00386 and CCNA_00387 are separated by 129 nucleotides CCNA_00387 and CCNA_00388 are separated by 127 nucleotides
CCNA_00385: CCNA_00385 - multidrug resistance protein, at 401,527 to 402,861
_00385
CCNA_00386: CCNA_00386 - DNA-3-methyladenine glycosylase, at 402,858 to 403,445
_00386
CCNA_00387: CCNA_00387 - hypothetical protein, at 403,575 to 403,997
_00387
CCNA_00388: CCNA_00388 - esterase lipase Family protein, at 404,125 to 405,006
_00388
Position (kb) 403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.582 kb on - strand, within CCNA_00385 at 402.588 kb on - strand, within CCNA_00385 at 402.588 kb on - strand, within CCNA_00385 at 402.601 kb on + strand, within CCNA_00385 at 402.716 kb on + strand, within CCNA_00385 at 402.727 kb on + strand, within CCNA_00385 at 402.730 kb on - strand at 402.734 kb on + strand at 402.739 kb on + strand at 402.759 kb on - strand at 402.770 kb on + strand at 402.770 kb on + strand at 402.770 kb on + strand at 402.772 kb on + strand at 402.778 kb on - strand at 402.779 kb on + strand at 402.804 kb on + strand at 402.806 kb on + strand at 402.812 kb on - strand at 402.819 kb on + strand at 402.840 kb on - strand at 402.841 kb on + strand at 402.845 kb on - strand at 402.867 kb on + strand at 402.867 kb on + strand at 402.867 kb on + strand at 402.874 kb on + strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.880 kb on - strand at 402.898 kb on + strand at 402.906 kb on - strand at 402.923 kb on + strand, within CCNA_00386 at 402.931 kb on - strand, within CCNA_00386 at 402.935 kb on + strand, within CCNA_00386 at 402.943 kb on + strand, within CCNA_00386 at 402.956 kb on - strand, within CCNA_00386 at 402.976 kb on + strand, within CCNA_00386 at 402.991 kb on + strand, within CCNA_00386 at 402.991 kb on + strand, within CCNA_00386 at 402.999 kb on - strand, within CCNA_00386 at 402.999 kb on - strand, within CCNA_00386 at 403.000 kb on - strand, within CCNA_00386 at 403.037 kb on - strand, within CCNA_00386 at 403.040 kb on + strand, within CCNA_00386 at 403.070 kb on + strand, within CCNA_00386 at 403.094 kb on - strand, within CCNA_00386 at 403.098 kb on + strand, within CCNA_00386 at 403.118 kb on + strand, within CCNA_00386 at 403.123 kb on + strand, within CCNA_00386 at 403.140 kb on + strand, within CCNA_00386 at 403.177 kb on + strand, within CCNA_00386 at 403.181 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.275 kb on - strand, within CCNA_00386 at 403.345 kb on + strand, within CCNA_00386 at 403.348 kb on - strand, within CCNA_00386 at 403.372 kb on - strand, within CCNA_00386 at 403.395 kb on - strand at 403.408 kb on - strand at 403.457 kb on + strand at 403.465 kb on - strand at 403.549 kb on - strand at 403.550 kb on + strand at 403.550 kb on + strand at 403.558 kb on - strand at 403.583 kb on + strand at 403.583 kb on + strand at 403.583 kb on + strand at 403.591 kb on - strand at 403.591 kb on - strand at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.644 kb on + strand, within CCNA_00387 at 403.654 kb on + strand, within CCNA_00387 at 403.657 kb on - strand, within CCNA_00387 at 403.679 kb on + strand, within CCNA_00387 at 403.809 kb on + strand, within CCNA_00387 at 403.827 kb on + strand, within CCNA_00387 at 403.842 kb on + strand, within CCNA_00387 at 403.850 kb on - strand, within CCNA_00387 at 403.866 kb on + strand, within CCNA_00387 at 403.930 kb on + strand, within CCNA_00387 at 403.965 kb on - strand at 403.976 kb on - strand at 403.997 kb on - strand at 404.029 kb on - strand at 404.030 kb on - strand at 404.125 kb on - strand at 404.148 kb on - strand at 404.193 kb on - strand at 404.199 kb on + strand at 404.214 kb on + strand, within CCNA_00388 at 404.222 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.247 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.305 kb on - strand, within CCNA_00388 at 404.318 kb on + strand, within CCNA_00388 at 404.346 kb on + strand, within CCNA_00388 at 404.349 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.407 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.416 kb on - strand, within CCNA_00388 at 404.435 kb on - strand, within CCNA_00388 at 404.436 kb on - strand, within CCNA_00388 at 404.438 kb on + strand, within CCNA_00388 at 404.446 kb on - strand, within CCNA_00388 at 404.455 kb on - strand, within CCNA_00388 at 404.482 kb on - strand, within CCNA_00388 at 404.564 kb on + strand, within CCNA_00388 at 404.608 kb on - strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.640 kb on + strand, within CCNA_00388 at 404.640 kb on + strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.671 kb on + strand, within CCNA_00388 at 404.674 kb on + strand, within CCNA_00388 at 404.679 kb on - strand, within CCNA_00388 at 404.679 kb on - strand, within CCNA_00388 at 404.696 kb on - strand, within CCNA_00388 at 404.697 kb on - strand, within CCNA_00388 at 404.697 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.714 kb on - strand, within CCNA_00388 at 404.722 kb on + strand, within CCNA_00388 at 404.728 kb on + strand, within CCNA_00388 at 404.733 kb on + strand, within CCNA_00388 at 404.752 kb on - strand, within CCNA_00388 at 404.785 kb on - strand, within CCNA_00388 at 404.812 kb on + strand, within CCNA_00388 at 404.858 kb on + strand, within CCNA_00388 at 404.907 kb on + strand, within CCNA_00388 at 404.912 kb on + strand, within CCNA_00388 at 404.936 kb on + strand at 404.943 kb on - strand at 404.953 kb on - strand at 404.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 402,582 - CCNA_00385 0.79 -1.3 402,588 - CCNA_00385 0.79 -0.4 402,588 - CCNA_00385 0.79 +0.4 402,601 + CCNA_00385 0.80 -0.3 402,716 + CCNA_00385 0.89 +0.5 402,727 + CCNA_00385 0.90 -1.2 402,730 - -0.6 402,734 + -2.6 402,739 + -1.8 402,759 - -0.5 402,770 + -1.8 402,770 + +0.4 402,770 + -0.4 402,772 + +0.9 402,778 - -1.0 402,779 + -0.7 402,804 + -1.4 402,806 + +0.6 402,812 - -0.3 402,819 + -1.2 402,840 - -0.5 402,841 + -0.4 402,845 - -2.3 402,867 + -0.1 402,867 + -0.8 402,867 + +0.4 402,874 + +0.4 402,875 - +0.9 402,875 - -1.1 402,875 - +0.9 402,875 - -0.5 402,880 - +0.9 402,898 + -0.0 402,906 - -0.6 402,923 + CCNA_00386 0.11 +1.7 402,931 - CCNA_00386 0.12 -1.0 402,935 + CCNA_00386 0.13 +1.1 402,943 + CCNA_00386 0.14 -0.3 402,956 - CCNA_00386 0.17 -1.0 402,976 + CCNA_00386 0.20 +0.4 402,991 + CCNA_00386 0.23 +0.2 402,991 + CCNA_00386 0.23 +2.1 402,999 - CCNA_00386 0.24 -1.7 402,999 - CCNA_00386 0.24 -3.0 403,000 - CCNA_00386 0.24 -1.2 403,037 - CCNA_00386 0.30 -1.2 403,040 + CCNA_00386 0.31 -0.3 403,070 + CCNA_00386 0.36 -2.7 403,094 - CCNA_00386 0.40 -1.7 403,098 + CCNA_00386 0.41 -1.6 403,118 + CCNA_00386 0.44 -0.2 403,123 + CCNA_00386 0.45 -1.4 403,140 + CCNA_00386 0.48 -0.5 403,177 + CCNA_00386 0.54 -1.5 403,181 - CCNA_00386 0.55 -0.1 403,185 - CCNA_00386 0.56 -1.2 403,185 - CCNA_00386 0.56 -2.2 403,275 - CCNA_00386 0.71 +1.0 403,345 + CCNA_00386 0.83 -1.3 403,348 - CCNA_00386 0.83 -2.3 403,372 - CCNA_00386 0.87 -0.3 403,395 - -1.4 403,408 - -1.5 403,457 + -1.3 403,465 - +1.9 403,549 - -0.1 403,550 + -0.8 403,550 + -0.6 403,558 - -0.0 403,583 + -0.1 403,583 + -0.7 403,583 + -1.2 403,591 - +0.6 403,591 - -0.3 403,639 + CCNA_00387 0.15 +0.9 403,639 + CCNA_00387 0.15 -0.6 403,639 + CCNA_00387 0.15 -2.8 403,639 + CCNA_00387 0.15 -1.2 403,639 + CCNA_00387 0.15 +1.4 403,644 + CCNA_00387 0.16 -0.8 403,654 + CCNA_00387 0.19 +1.1 403,657 - CCNA_00387 0.19 -0.5 403,679 + CCNA_00387 0.25 -2.1 403,809 + CCNA_00387 0.55 -0.3 403,827 + CCNA_00387 0.60 -1.3 403,842 + CCNA_00387 0.63 -0.9 403,850 - CCNA_00387 0.65 -2.9 403,866 + CCNA_00387 0.69 -2.3 403,930 + CCNA_00387 0.84 -0.0 403,965 - -0.3 403,976 - +0.2 403,997 - +0.6 404,029 - +0.9 404,030 - +0.7 404,125 - +1.5 404,148 - +0.6 404,193 - +0.7 404,199 + -1.4 404,214 + CCNA_00388 0.10 +0.1 404,222 - CCNA_00388 0.11 +0.8 404,230 - CCNA_00388 0.12 -0.2 404,230 - CCNA_00388 0.12 +0.1 404,230 - CCNA_00388 0.12 -1.7 404,247 + CCNA_00388 0.14 -2.9 404,290 + CCNA_00388 0.19 -0.1 404,290 + CCNA_00388 0.19 +1.5 404,305 - CCNA_00388 0.20 +0.0 404,318 + CCNA_00388 0.22 -1.6 404,346 + CCNA_00388 0.25 -1.2 404,349 - CCNA_00388 0.25 -0.6 404,374 - CCNA_00388 0.28 +1.1 404,374 - CCNA_00388 0.28 +1.7 404,374 - CCNA_00388 0.28 -0.8 404,407 - CCNA_00388 0.32 -0.2 404,415 - CCNA_00388 0.33 +0.7 404,415 - CCNA_00388 0.33 -0.1 404,416 - CCNA_00388 0.33 +0.5 404,435 - CCNA_00388 0.35 -0.2 404,436 - CCNA_00388 0.35 -1.4 404,438 + CCNA_00388 0.35 -0.3 404,446 - CCNA_00388 0.36 -0.0 404,455 - CCNA_00388 0.37 -0.4 404,482 - CCNA_00388 0.40 +1.2 404,564 + CCNA_00388 0.50 -1.2 404,608 - CCNA_00388 0.55 +0.4 404,619 + CCNA_00388 0.56 -0.3 404,619 + CCNA_00388 0.56 -0.7 404,619 + CCNA_00388 0.56 -0.2 404,619 + CCNA_00388 0.56 -0.6 404,619 + CCNA_00388 0.56 -1.0 404,627 - CCNA_00388 0.57 -0.9 404,627 - CCNA_00388 0.57 +0.8 404,627 - CCNA_00388 0.57 +0.2 404,640 + CCNA_00388 0.58 +0.9 404,640 + CCNA_00388 0.58 -0.2 404,648 - CCNA_00388 0.59 -0.2 404,648 - CCNA_00388 0.59 +1.9 404,648 - CCNA_00388 0.59 +0.4 404,671 + CCNA_00388 0.62 -1.4 404,674 + CCNA_00388 0.62 -1.2 404,679 - CCNA_00388 0.63 -0.8 404,679 - CCNA_00388 0.63 +0.3 404,696 - CCNA_00388 0.65 +0.0 404,697 - CCNA_00388 0.65 +0.3 404,697 - CCNA_00388 0.65 -0.3 404,704 - CCNA_00388 0.66 -1.9 404,704 - CCNA_00388 0.66 +0.3 404,704 - CCNA_00388 0.66 +1.1 404,714 - CCNA_00388 0.67 +0.3 404,722 + CCNA_00388 0.68 +0.1 404,728 + CCNA_00388 0.68 +0.5 404,733 + CCNA_00388 0.69 -2.6 404,752 - CCNA_00388 0.71 -0.3 404,785 - CCNA_00388 0.75 +0.4 404,812 + CCNA_00388 0.78 -0.8 404,858 + CCNA_00388 0.83 -0.5 404,907 + CCNA_00388 0.89 -0.6 404,912 + CCNA_00388 0.89 +1.1 404,936 + +1.1 404,943 - +0.6 404,953 - +0.2 404,968 - +0.2
Or see this region's nucleotide sequence