Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00164

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00163 and CCNA_00164 overlap by 11 nucleotidesCCNA_00164 and CCNA_00165 overlap by 7 nucleotidesCCNA_00165 and CCNA_03915 are separated by 198 nucleotides CCNA_00163: CCNA_00163 - exopolysaccharide transport family protein, at 172,964 to 175,183 _00163 CCNA_00164: CCNA_00164 - O-antigen polymerase, at 175,173 to 177,098 _00164 CCNA_00165: CCNA_00165 - polyisoprenylphosphate hexose-1-phosphotransferase pssY, at 177,092 to 177,745 _00165 CCNA_03915: CCNA_03915 - hypothetical protein, at 177,944 to 178,090 _03915 Position (kb) 175 176 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 174.181 kb on + strand, within CCNA_00163at 174.211 kb on + strand, within CCNA_00163at 174.235 kb on - strand, within CCNA_00163at 174.269 kb on + strand, within CCNA_00163at 174.269 kb on + strand, within CCNA_00163at 174.279 kb on + strand, within CCNA_00163at 174.288 kb on + strand, within CCNA_00163at 174.322 kb on + strand, within CCNA_00163at 174.435 kb on - strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.455 kb on + strand, within CCNA_00163at 174.508 kb on + strand, within CCNA_00163at 174.528 kb on - strand, within CCNA_00163at 174.608 kb on - strand, within CCNA_00163at 174.660 kb on + strand, within CCNA_00163at 174.660 kb on + strand, within CCNA_00163at 174.704 kb on - strand, within CCNA_00163at 174.783 kb on + strand, within CCNA_00163at 174.791 kb on - strand, within CCNA_00163at 174.818 kb on + strand, within CCNA_00163at 174.818 kb on + strand, within CCNA_00163at 174.849 kb on - strand, within CCNA_00163at 174.963 kb on + strandat 175.024 kb on + strandat 175.024 kb on + strandat 175.024 kb on + strandat 175.032 kb on - strandat 175.032 kb on - strandat 175.054 kb on + strandat 175.225 kb on + strandat 175.242 kb on + strandat 175.250 kb on - strandat 175.278 kb on - strandat 175.401 kb on + strand, within CCNA_00164at 175.416 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.654 kb on + strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.681 kb on + strand, within CCNA_00164at 175.686 kb on + strand, within CCNA_00164at 175.689 kb on - strand, within CCNA_00164at 175.694 kb on - strand, within CCNA_00164at 175.758 kb on - strand, within CCNA_00164at 175.826 kb on + strand, within CCNA_00164at 175.884 kb on - strand, within CCNA_00164at 175.918 kb on - strand, within CCNA_00164at 175.985 kb on + strand, within CCNA_00164at 175.985 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 176.014 kb on - strand, within CCNA_00164at 176.039 kb on + strand, within CCNA_00164at 176.042 kb on - strand, within CCNA_00164at 176.060 kb on - strand, within CCNA_00164at 176.068 kb on + strand, within CCNA_00164at 176.075 kb on + strand, within CCNA_00164at 176.126 kb on + strand, within CCNA_00164at 176.146 kb on + strand, within CCNA_00164at 176.175 kb on + strand, within CCNA_00164at 176.238 kb on + strand, within CCNA_00164at 176.303 kb on - strand, within CCNA_00164at 176.320 kb on - strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.388 kb on - strand, within CCNA_00164at 176.421 kb on + strand, within CCNA_00164at 176.434 kb on - strand, within CCNA_00164at 176.501 kb on + strand, within CCNA_00164at 176.584 kb on - strand, within CCNA_00164at 176.628 kb on + strand, within CCNA_00164at 176.630 kb on + strand, within CCNA_00164at 176.630 kb on + strand, within CCNA_00164at 176.638 kb on - strand, within CCNA_00164at 176.638 kb on - strand, within CCNA_00164at 176.690 kb on + strand, within CCNA_00164at 176.698 kb on - strand, within CCNA_00164at 176.711 kb on + strand, within CCNA_00164at 176.719 kb on - strand, within CCNA_00164at 176.794 kb on - strand, within CCNA_00164at 176.846 kb on - strand, within CCNA_00164at 176.870 kb on + strand, within CCNA_00164at 176.972 kb on + strandat 176.980 kb on - strandat 177.006 kb on + strandat 177.019 kb on + strandat 177.022 kb on + strandat 177.048 kb on - strandat 177.067 kb on - strandat 177.085 kb on - strandat 177.101 kb on + strandat 177.119 kb on + strandat 177.119 kb on + strandat 177.119 kb on + strandat 177.124 kb on + strandat 177.149 kb on - strandat 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.209 kb on + strand, within CCNA_00165at 177.217 kb on - strand, within CCNA_00165at 177.220 kb on + strand, within CCNA_00165at 177.240 kb on + strand, within CCNA_00165at 177.240 kb on + strand, within CCNA_00165at 177.248 kb on - strand, within CCNA_00165at 177.248 kb on - strand, within CCNA_00165at 177.255 kb on + strand, within CCNA_00165at 177.258 kb on - strandat 177.263 kb on - strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.320 kb on - strand, within CCNA_00165at 177.320 kb on - strandat 177.320 kb on - strand, within CCNA_00165at 177.378 kb on + strand, within CCNA_00165at 177.400 kb on + strand, within CCNA_00165at 177.445 kb on - strand, within CCNA_00165at 177.454 kb on - strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.570 kb on - strand, within CCNA_00165at 177.570 kb on - strand, within CCNA_00165at 177.686 kb on - strandat 177.699 kb on + strandat 177.714 kb on + strandat 177.719 kb on + strandat 177.722 kb on - strandat 177.771 kb on + strandat 177.785 kb on - strandat 177.795 kb on - strandat 177.802 kb on + strandat 177.808 kb on - strandat 177.828 kb on - strandat 177.828 kb on - strandat 177.863 kb on + strandat 177.881 kb on + strandat 177.906 kb on - strandat 178.056 kb on - strand, within CCNA_03915at 178.084 kb on + strandat 178.084 kb on + strandat 178.092 kb on - strandat 178.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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174,181 + CCNA_00163 0.55 +3.4
174,211 + CCNA_00163 0.56 +3.4
174,235 - CCNA_00163 0.57 -1.6
174,269 + CCNA_00163 0.59 +3.3
174,269 + CCNA_00163 0.59 +2.6
174,279 + CCNA_00163 0.59 +2.7
174,288 + CCNA_00163 0.60 +3.1
174,322 + CCNA_00163 0.61 +2.9
174,435 - CCNA_00163 0.66 -1.7
174,437 + CCNA_00163 0.66 +2.5
174,437 + CCNA_00163 0.66 +2.6
174,437 + CCNA_00163 0.66 +2.8
174,437 + CCNA_00163 0.66 +2.5
174,445 - CCNA_00163 0.67 -1.8
174,445 - CCNA_00163 0.67 -2.3
174,455 + CCNA_00163 0.67 +2.7
174,508 + CCNA_00163 0.70 +3.4
174,528 - CCNA_00163 0.70 -2.7
174,608 - CCNA_00163 0.74 +0.0
174,660 + CCNA_00163 0.76 +3.3
174,660 + CCNA_00163 0.76 +3.2
174,704 - CCNA_00163 0.78 -2.3
174,783 + CCNA_00163 0.82 +3.2
174,791 - CCNA_00163 0.82 +1.9
174,818 + CCNA_00163 0.84 +3.2
174,818 + CCNA_00163 0.84 +3.2
174,849 - CCNA_00163 0.85 -1.2
174,963 + +3.1
175,024 + +3.3
175,024 + +3.3
175,024 + +2.8
175,032 - -1.6
175,032 - -0.7
175,054 + +3.1
175,225 + +3.1
175,242 + +3.1
175,250 - -0.6
175,278 - +0.6
175,401 + CCNA_00164 0.12 +2.7
175,416 + CCNA_00164 0.13 +1.9
175,649 + CCNA_00164 0.25 +1.9
175,649 + CCNA_00164 0.25 +2.0
175,649 + CCNA_00164 0.25 +2.0
175,649 + CCNA_00164 0.25 +1.8
175,649 + CCNA_00164 0.25 +1.9
175,654 + CCNA_00164 0.25 +2.0
175,657 - CCNA_00164 0.25 +0.2
175,657 - CCNA_00164 0.25 -0.5
175,681 + CCNA_00164 0.26 +1.1
175,686 + CCNA_00164 0.27 +2.0
175,689 - CCNA_00164 0.27 +0.9
175,694 - CCNA_00164 0.27 +0.7
175,758 - CCNA_00164 0.30 -1.1
175,826 + CCNA_00164 0.34 +3.0
175,884 - CCNA_00164 0.37 -1.3
175,918 - CCNA_00164 0.39 -1.1
175,985 + CCNA_00164 0.42 +2.3
175,985 + CCNA_00164 0.42 +2.3
175,991 + CCNA_00164 0.42 +2.1
175,999 - CCNA_00164 0.43 -0.7
176,014 - CCNA_00164 0.44 -1.5
176,039 + CCNA_00164 0.45 +1.8
176,042 - CCNA_00164 0.45 +1.5
176,060 - CCNA_00164 0.46 +0.7
176,068 + CCNA_00164 0.46 +1.7
176,075 + CCNA_00164 0.47 +1.9
176,126 + CCNA_00164 0.49 +2.0
176,146 + CCNA_00164 0.51 +2.2
176,175 + CCNA_00164 0.52 +1.7
176,238 + CCNA_00164 0.55 +2.1
176,303 - CCNA_00164 0.59 +0.6
176,320 - CCNA_00164 0.60 -2.0
176,385 + CCNA_00164 0.63 +2.5
176,385 + CCNA_00164 0.63 +3.1
176,388 - CCNA_00164 0.63 -0.6
176,421 + CCNA_00164 0.65 +2.3
176,434 - CCNA_00164 0.65 +0.7
176,501 + CCNA_00164 0.69 +2.8
176,584 - CCNA_00164 0.73 +0.5
176,628 + CCNA_00164 0.76 +1.9
176,630 + CCNA_00164 0.76 +2.2
176,630 + CCNA_00164 0.76 +2.3
176,638 - CCNA_00164 0.76 -1.4
176,638 - CCNA_00164 0.76 +0.6
176,690 + CCNA_00164 0.79 +2.0
176,698 - CCNA_00164 0.79 -2.2
176,711 + CCNA_00164 0.80 +2.2
176,719 - CCNA_00164 0.80 +2.5
176,794 - CCNA_00164 0.84 -0.8
176,846 - CCNA_00164 0.87 +0.1
176,870 + CCNA_00164 0.88 +2.3
176,972 + +0.8
176,980 - -1.1
177,006 + +1.9
177,019 + +1.5
177,022 + +1.5
177,048 - -1.1
177,067 - +0.4
177,085 - +0.1
177,101 + +2.1
177,119 + +1.5
177,119 + +0.9
177,119 + +2.2
177,124 + +0.8
177,149 - +2.1
177,167 + CCNA_00165 0.11 +1.3
177,167 + CCNA_00165 0.11 -0.1
177,167 + CCNA_00165 0.11 +0.5
177,167 + CCNA_00165 0.11 +0.1
177,167 + CCNA_00165 0.11 +0.6
177,167 + CCNA_00165 0.11 +0.5
177,175 - CCNA_00165 0.13 -1.7
177,175 - CCNA_00165 0.13 -0.9
177,175 - CCNA_00165 0.13 +0.9
177,175 - CCNA_00165 0.13 +0.1
177,175 - CCNA_00165 0.13 -1.3
177,175 - CCNA_00165 0.13 -0.6
177,175 - CCNA_00165 0.13 +0.1
177,175 - CCNA_00165 0.13 -2.6
177,209 + CCNA_00165 0.18 +1.3
177,217 - CCNA_00165 0.19 -1.4
177,220 + CCNA_00165 0.20 +0.9
177,240 + CCNA_00165 0.23 -1.2
177,240 + CCNA_00165 0.23 +1.4
177,248 - CCNA_00165 0.24 +1.0
177,248 - CCNA_00165 0.24 +0.5
177,255 + CCNA_00165 0.25 +1.3
177,258 - +2.5
177,263 - CCNA_00165 0.26 -1.2
177,312 + CCNA_00165 0.34 +0.1
177,320 - CCNA_00165 0.35 -2.4
177,320 - +0.7
177,320 - CCNA_00165 0.35 +1.1
177,378 + CCNA_00165 0.44 +0.5
177,400 + CCNA_00165 0.47 +0.6
177,445 - CCNA_00165 0.54 +0.6
177,454 - CCNA_00165 0.55 +0.1
177,472 + CCNA_00165 0.58 +0.2
177,472 + CCNA_00165 0.58 +0.3
177,472 + CCNA_00165 0.58 +1.8
177,472 + CCNA_00165 0.58 -0.5
177,570 - CCNA_00165 0.73 +0.1
177,570 - CCNA_00165 0.73 -0.3
177,686 - +1.3
177,699 + -2.5
177,714 + -1.5
177,719 + +0.7
177,722 - -0.0
177,771 + -1.2
177,785 - -0.0
177,795 - -1.6
177,802 + -0.6
177,808 - -1.0
177,828 - -0.5
177,828 - -1.2
177,863 + +1.7
177,881 + -3.0
177,906 - -0.6
178,056 - CCNA_03915 0.76 -1.3
178,084 + +0.6
178,084 + +1.7
178,092 - -0.6
178,092 - -2.2

Or see this region's nucleotide sequence