Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00039

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00037 and CCNA_00038 are separated by 59 nucleotidesCCNA_00038 and CCNA_00039 overlap by 1 nucleotidesCCNA_00039 and CCNA_00040 are separated by 38 nucleotidesCCNA_00040 and CCNA_00041 are separated by 73 nucleotides CCNA_00037: CCNA_00037 - esterase lipase family protein, at 39,980 to 40,768 _00037 CCNA_00038: CCNA_00038 - hypothetical protein, at 40,828 to 41,403 _00038 CCNA_00039: CCNA_00039 - hypothetical protein, at 41,403 to 41,921 _00039 CCNA_00040: CCNA_00040 - YcxB-like membrane protein, at 41,960 to 42,511 _00040 CCNA_00041: CCNA_00041 - protein translation initiation factor 2 IF-2, at 42,585 to 45,614 _00041 Position (kb) 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 40.405 kb on - strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.435 kb on + strand, within CCNA_00037at 40.465 kb on + strand, within CCNA_00037at 40.473 kb on - strand, within CCNA_00037at 40.506 kb on + strand, within CCNA_00037at 40.514 kb on - strand, within CCNA_00037at 40.514 kb on - strand, within CCNA_00037at 40.576 kb on + strand, within CCNA_00037at 40.601 kb on - strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strandat 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.646 kb on + strandat 40.678 kb on + strandat 40.678 kb on + strand, within CCNA_00037at 40.686 kb on - strand, within CCNA_00037at 40.745 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.796 kb on + strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.823 kb on - strandat 40.825 kb on + strandat 40.847 kb on - strandat 40.847 kb on - strandat 40.848 kb on - strandat 40.883 kb on + strandat 40.891 kb on - strand, within CCNA_00038at 40.927 kb on + strand, within CCNA_00038at 41.009 kb on + strand, within CCNA_00038at 41.009 kb on + strand, within CCNA_00038at 41.043 kb on + strand, within CCNA_00038at 41.062 kb on + strand, within CCNA_00038at 41.064 kb on + strand, within CCNA_00038at 41.069 kb on + strand, within CCNA_00038at 41.069 kb on + strand, within CCNA_00038at 41.072 kb on - strand, within CCNA_00038at 41.077 kb on - strand, within CCNA_00038at 41.077 kb on - strand, within CCNA_00038at 41.077 kb on - strand, within CCNA_00038at 41.089 kb on + strand, within CCNA_00038at 41.107 kb on - strand, within CCNA_00038at 41.111 kb on + strand, within CCNA_00038at 41.254 kb on - strand, within CCNA_00038at 41.254 kb on - strand, within CCNA_00038at 41.256 kb on + strand, within CCNA_00038at 41.260 kb on + strand, within CCNA_00038at 41.260 kb on + strand, within CCNA_00038at 41.265 kb on + strand, within CCNA_00038at 41.265 kb on + strand, within CCNA_00038at 41.332 kb on - strand, within CCNA_00038at 41.336 kb on - strand, within CCNA_00038at 41.342 kb on - strand, within CCNA_00038at 41.344 kb on + strand, within CCNA_00038at 41.406 kb on - strandat 41.496 kb on - strand, within CCNA_00039at 41.506 kb on + strand, within CCNA_00039at 41.506 kb on + strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.748 kb on - strand, within CCNA_00039at 41.790 kb on + strand, within CCNA_00039at 41.794 kb on + strand, within CCNA_00039at 41.825 kb on - strand, within CCNA_00039at 41.825 kb on - strand, within CCNA_00039at 41.847 kb on + strand, within CCNA_00039at 41.891 kb on + strandat 41.891 kb on + strandat 41.958 kb on + strandat 41.958 kb on + strandat 41.959 kb on - strandat 41.963 kb on + strandat 41.966 kb on - strandat 41.968 kb on + strandat 41.968 kb on + strandat 41.968 kb on + strandat 41.974 kb on - strandat 41.991 kb on - strandat 42.004 kb on + strandat 42.079 kb on + strand, within CCNA_00040at 42.087 kb on - strand, within CCNA_00040at 42.092 kb on - strand, within CCNA_00040at 42.097 kb on - strand, within CCNA_00040at 42.098 kb on + strand, within CCNA_00040at 42.138 kb on + strand, within CCNA_00040at 42.157 kb on + strand, within CCNA_00040at 42.157 kb on + strand, within CCNA_00040at 42.157 kb on + strand, within CCNA_00040at 42.163 kb on - strand, within CCNA_00040at 42.163 kb on - strand, within CCNA_00040at 42.167 kb on - strand, within CCNA_00040at 42.190 kb on + strand, within CCNA_00040at 42.190 kb on + strand, within CCNA_00040at 42.198 kb on - strand, within CCNA_00040at 42.200 kb on - strand, within CCNA_00040at 42.232 kb on + strand, within CCNA_00040at 42.283 kb on + strand, within CCNA_00040at 42.292 kb on + strand, within CCNA_00040at 42.292 kb on + strandat 42.300 kb on - strand, within CCNA_00040at 42.361 kb on - strand, within CCNA_00040at 42.392 kb on + strand, within CCNA_00040at 42.392 kb on + strand, within CCNA_00040at 42.400 kb on - strand, within CCNA_00040at 42.400 kb on - strand, within CCNA_00040at 42.558 kb on + strandat 42.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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40,405 - CCNA_00037 0.54 -1.9
40,422 + CCNA_00037 0.56 -1.1
40,422 + CCNA_00037 0.56 +0.3
40,430 - CCNA_00037 0.57 +0.1
40,430 - CCNA_00037 0.57 +1.1
40,435 + CCNA_00037 0.58 -2.2
40,465 + CCNA_00037 0.61 -1.8
40,473 - CCNA_00037 0.62 +0.5
40,506 + CCNA_00037 0.67 +0.0
40,514 - CCNA_00037 0.68 +0.5
40,514 - CCNA_00037 0.68 +0.5
40,576 + CCNA_00037 0.76 +0.3
40,601 - CCNA_00037 0.79 +0.6
40,625 + CCNA_00037 0.82 -1.4
40,625 + CCNA_00037 0.82 -2.0
40,625 + CCNA_00037 0.82 -0.2
40,625 + CCNA_00037 0.82 -0.2
40,625 + CCNA_00037 0.82 +0.3
40,625 + CCNA_00037 0.82 -1.1
40,633 - CCNA_00037 0.83 +0.6
40,633 - CCNA_00037 0.83 -0.4
40,633 - CCNA_00037 0.83 +1.5
40,633 - CCNA_00037 0.83 +1.0
40,633 - +1.9
40,633 - CCNA_00037 0.83 +0.7
40,633 - CCNA_00037 0.83 -0.6
40,646 + +1.9
40,678 + +1.1
40,678 + CCNA_00037 0.88 -0.9
40,686 - CCNA_00037 0.89 -1.9
40,745 + -2.0
40,795 + -2.6
40,795 + +0.3
40,795 + +0.1
40,795 + +1.5
40,795 + +0.0
40,795 + +0.1
40,795 + -1.1
40,795 + +0.1
40,796 + -1.4
40,803 - +0.8
40,803 - +0.5
40,803 - -0.9
40,803 - -1.6
40,803 - +0.7
40,803 - -0.4
40,803 - +0.5
40,823 - +0.8
40,825 + +0.4
40,847 - +0.2
40,847 - -0.3
40,848 - +0.9
40,883 + -1.8
40,891 - CCNA_00038 0.11 +0.7
40,927 + CCNA_00038 0.17 +0.1
41,009 + CCNA_00038 0.31 -2.7
41,009 + CCNA_00038 0.31 -2.1
41,043 + CCNA_00038 0.37 -2.2
41,062 + CCNA_00038 0.41 -1.2
41,064 + CCNA_00038 0.41 -2.6
41,069 + CCNA_00038 0.42 -1.6
41,069 + CCNA_00038 0.42 -1.1
41,072 - CCNA_00038 0.42 +0.3
41,077 - CCNA_00038 0.43 -0.1
41,077 - CCNA_00038 0.43 -0.1
41,077 - CCNA_00038 0.43 +1.3
41,089 + CCNA_00038 0.45 +1.5
41,107 - CCNA_00038 0.48 +0.2
41,111 + CCNA_00038 0.49 -0.9
41,254 - CCNA_00038 0.74 +0.8
41,254 - CCNA_00038 0.74 +0.0
41,256 + CCNA_00038 0.74 +0.8
41,260 + CCNA_00038 0.75 -1.9
41,260 + CCNA_00038 0.75 -0.5
41,265 + CCNA_00038 0.76 +0.1
41,265 + CCNA_00038 0.76 -0.0
41,332 - CCNA_00038 0.88 +0.7
41,336 - CCNA_00038 0.88 -1.0
41,342 - CCNA_00038 0.89 +0.4
41,344 + CCNA_00038 0.90 -2.1
41,406 - +1.5
41,496 - CCNA_00039 0.18 +1.1
41,506 + CCNA_00039 0.20 -1.5
41,506 + CCNA_00039 0.20 +1.1
41,514 - CCNA_00039 0.21 +1.5
41,514 - CCNA_00039 0.21 +0.4
41,514 - CCNA_00039 0.21 +1.7
41,514 - CCNA_00039 0.21 +1.0
41,625 + CCNA_00039 0.43 -2.3
41,625 + CCNA_00039 0.43 -1.5
41,625 + CCNA_00039 0.43 -1.0
41,625 + CCNA_00039 0.43 -1.7
41,625 + CCNA_00039 0.43 +1.4
41,625 + CCNA_00039 0.43 -0.7
41,633 - CCNA_00039 0.44 +0.4
41,633 - CCNA_00039 0.44 +0.1
41,633 - CCNA_00039 0.44 +1.3
41,633 - CCNA_00039 0.44 +0.8
41,633 - CCNA_00039 0.44 +0.4
41,633 - CCNA_00039 0.44 +1.3
41,633 - CCNA_00039 0.44 +0.7
41,633 - CCNA_00039 0.44 +1.5
41,633 - CCNA_00039 0.44 +1.1
41,633 - CCNA_00039 0.44 +1.0
41,633 - CCNA_00039 0.44 +0.6
41,694 + CCNA_00039 0.56 +0.1
41,694 + CCNA_00039 0.56 -1.3
41,694 + CCNA_00039 0.56 +0.1
41,694 + CCNA_00039 0.56 +1.5
41,694 + CCNA_00039 0.56 +1.2
41,702 - CCNA_00039 0.58 +0.5
41,702 - CCNA_00039 0.58 +0.5
41,748 - CCNA_00039 0.66 +0.9
41,790 + CCNA_00039 0.75 -1.8
41,794 + CCNA_00039 0.75 +1.5
41,825 - CCNA_00039 0.81 -0.9
41,825 - CCNA_00039 0.81 +1.7
41,847 + CCNA_00039 0.86 -1.2
41,891 + -1.6
41,891 + +0.1
41,958 + +1.5
41,958 + +1.4
41,959 - -1.7
41,963 + +0.7
41,966 - +0.0
41,968 + -0.2
41,968 + +0.1
41,968 + -0.4
41,974 - +0.2
41,991 - +1.1
42,004 + -2.1
42,079 + CCNA_00040 0.22 -0.4
42,087 - CCNA_00040 0.23 -0.5
42,092 - CCNA_00040 0.24 -0.2
42,097 - CCNA_00040 0.25 +1.9
42,098 + CCNA_00040 0.25 -0.1
42,138 + CCNA_00040 0.32 -1.0
42,157 + CCNA_00040 0.36 -0.7
42,157 + CCNA_00040 0.36 -0.7
42,157 + CCNA_00040 0.36 -0.7
42,163 - CCNA_00040 0.37 -0.8
42,163 - CCNA_00040 0.37 +0.4
42,167 - CCNA_00040 0.38 +0.5
42,190 + CCNA_00040 0.42 -1.4
42,190 + CCNA_00040 0.42 +0.8
42,198 - CCNA_00040 0.43 +1.1
42,200 - CCNA_00040 0.43 +0.1
42,232 + CCNA_00040 0.49 -0.1
42,283 + CCNA_00040 0.59 +2.1
42,292 + CCNA_00040 0.60 -1.4
42,292 + +1.1
42,300 - CCNA_00040 0.62 +0.8
42,361 - CCNA_00040 0.73 -0.1
42,392 + CCNA_00040 0.78 -0.9
42,392 + CCNA_00040 0.78 -1.9
42,400 - CCNA_00040 0.80 +0.4
42,400 - CCNA_00040 0.80 +1.0
42,558 + +0.5
42,558 + +0.5

Or see this region's nucleotide sequence