Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19135

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19125 and ABZR86_RS19130 are separated by 183 nucleotidesABZR86_RS19130 and ABZR86_RS19135 are separated by 101 nucleotidesABZR86_RS19135 and ABZR86_RS19140 are separated by 147 nucleotidesABZR86_RS19140 and ABZR86_RS19145 are separated by 58 nucleotides ABZR86_RS19125: ABZR86_RS19125 - ATP-binding protein, at 269,357 to 270,634 _RS19125 ABZR86_RS19130: ABZR86_RS19130 - outer membrane beta-barrel protein, at 270,818 to 271,510 _RS19130 ABZR86_RS19135: ABZR86_RS19135 - hypothetical protein, at 271,612 to 271,872 _RS19135 ABZR86_RS19140: ABZR86_RS19140 - outer membrane beta-barrel protein, at 272,020 to 272,745 _RS19140 ABZR86_RS19145: ABZR86_RS19145 - glucan ABC transporter ATP-binding protein/ permease, at 272,804 to 274,552 _RS19145 Position (kb) 271 272Strain fitness (log2 ratio) -2 -1 0 1 2at 270.693 kb on + strandat 270.703 kb on + strandat 270.729 kb on + strandat 270.791 kb on - strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.927 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.220 kb on + strand, within ABZR86_RS19130at 271.221 kb on - strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.333 kb on + strand, within ABZR86_RS19130at 271.333 kb on + strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.336 kb on + strand, within ABZR86_RS19130at 271.337 kb on - strand, within ABZR86_RS19130at 271.337 kb on - strand, within ABZR86_RS19130at 271.370 kb on + strand, within ABZR86_RS19130at 271.384 kb on + strand, within ABZR86_RS19130at 271.385 kb on - strand, within ABZR86_RS19130at 271.465 kb on - strandat 271.496 kb on + strandat 271.508 kb on + strandat 271.508 kb on + strandat 271.509 kb on - strandat 271.509 kb on - strandat 271.516 kb on + strandat 271.516 kb on + strandat 271.517 kb on - strandat 271.728 kb on - strand, within ABZR86_RS19135at 271.878 kb on + strandat 271.878 kb on + strandat 271.900 kb on + strandat 271.924 kb on - strandat 272.103 kb on - strand, within ABZR86_RS19140at 272.128 kb on + strand, within ABZR86_RS19140at 272.128 kb on + strand, within ABZR86_RS19140at 272.128 kb on + strand, within ABZR86_RS19140at 272.129 kb on - strand, within ABZR86_RS19140at 272.129 kb on - strand, within ABZR86_RS19140at 272.161 kb on + strand, within ABZR86_RS19140at 272.287 kb on + strand, within ABZR86_RS19140at 272.425 kb on + strand, within ABZR86_RS19140at 272.446 kb on + strand, within ABZR86_RS19140at 272.446 kb on + strand, within ABZR86_RS19140at 272.608 kb on + strand, within ABZR86_RS19140at 272.608 kb on + strand, within ABZR86_RS19140at 272.720 kb on + strandat 272.720 kb on + strandat 272.805 kb on + strandat 272.806 kb on - strandat 272.806 kb on - strandat 272.807 kb on + strandat 272.807 kb on + strandat 272.808 kb on - strandat 272.808 kb on - strandat 272.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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270,693 + -1.5
270,703 + +0.2
270,729 + -1.1
270,791 - +0.7
270,832 + -0.4
270,832 + -0.2
270,927 - ABZR86_RS19130 0.16 +0.2
271,177 - ABZR86_RS19130 0.52 -0.6
271,177 - ABZR86_RS19130 0.52 +0.6
271,177 - ABZR86_RS19130 0.52 +1.6
271,220 + ABZR86_RS19130 0.58 -0.3
271,221 - ABZR86_RS19130 0.58 +0.6
271,241 + ABZR86_RS19130 0.61 +0.4
271,241 + ABZR86_RS19130 0.61 -0.4
271,241 + ABZR86_RS19130 0.61 -0.0
271,241 + ABZR86_RS19130 0.61 -0.1
271,241 + ABZR86_RS19130 0.61 -0.2
271,241 + ABZR86_RS19130 0.61 -0.1
271,241 + ABZR86_RS19130 0.61 -0.4
271,241 + ABZR86_RS19130 0.61 +0.4
271,242 - ABZR86_RS19130 0.61 +0.8
271,242 - ABZR86_RS19130 0.61 +0.6
271,242 - ABZR86_RS19130 0.61 +0.2
271,242 - ABZR86_RS19130 0.61 +0.1
271,242 - ABZR86_RS19130 0.61 -0.4
271,242 - ABZR86_RS19130 0.61 -0.1
271,242 - ABZR86_RS19130 0.61 +2.0
271,242 - ABZR86_RS19130 0.61 -0.3
271,242 - ABZR86_RS19130 0.61 +0.7
271,242 - ABZR86_RS19130 0.61 -0.3
271,242 - ABZR86_RS19130 0.61 -0.1
271,242 - ABZR86_RS19130 0.61 -0.4
271,333 + ABZR86_RS19130 0.74 +1.7
271,333 + ABZR86_RS19130 0.74 -0.4
271,334 - ABZR86_RS19130 0.74 -0.2
271,334 - ABZR86_RS19130 0.74 +0.9
271,334 - ABZR86_RS19130 0.74 +0.1
271,336 + ABZR86_RS19130 0.75 -0.3
271,337 - ABZR86_RS19130 0.75 -0.2
271,337 - ABZR86_RS19130 0.75 +0.1
271,370 + ABZR86_RS19130 0.80 +0.0
271,384 + ABZR86_RS19130 0.82 -1.2
271,385 - ABZR86_RS19130 0.82 -0.2
271,465 - +0.2
271,496 + +0.2
271,508 + +0.3
271,508 + +0.6
271,509 - +0.4
271,509 - -0.3
271,516 + -0.3
271,516 + -0.2
271,517 - +0.9
271,728 - ABZR86_RS19135 0.44 -0.0
271,878 + -0.7
271,878 + +1.6
271,900 + -0.9
271,924 - -0.2
272,103 - ABZR86_RS19140 0.11 +0.0
272,128 + ABZR86_RS19140 0.15 -0.6
272,128 + ABZR86_RS19140 0.15 -0.4
272,128 + ABZR86_RS19140 0.15 -0.0
272,129 - ABZR86_RS19140 0.15 +0.3
272,129 - ABZR86_RS19140 0.15 +0.2
272,161 + ABZR86_RS19140 0.19 +1.4
272,287 + ABZR86_RS19140 0.37 -0.1
272,425 + ABZR86_RS19140 0.56 -0.5
272,446 + ABZR86_RS19140 0.59 +0.2
272,446 + ABZR86_RS19140 0.59 -0.2
272,608 + ABZR86_RS19140 0.81 -0.6
272,608 + ABZR86_RS19140 0.81 -0.0
272,720 + +1.1
272,720 + -0.8
272,805 + +0.5
272,806 - +1.5
272,806 - -0.1
272,807 + +0.4
272,807 + -1.7
272,808 - -2.1
272,808 - -0.4
272,808 - -0.0

Or see this region's nucleotide sequence