Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18500 and ABZR86_RS18505 overlap by 1 nucleotides ABZR86_RS18505 and ABZR86_RS18510 overlap by 4 nucleotides ABZR86_RS18510 and ABZR86_RS18515 are separated by 7 nucleotides
ABZR86_RS18500: ABZR86_RS18500 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 121,919 to 123,196
_RS18500
ABZR86_RS18505: ABZR86_RS18505 - NAD-dependent epimerase, at 123,196 to 124,242
_RS18505
ABZR86_RS18510: ABZR86_RS18510 - Gfo/Idh/MocA family oxidoreductase, at 124,239 to 125,192
_RS18510
ABZR86_RS18515: ABZR86_RS18515 - UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase, at 125,200 to 125,787
_RS18515
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1
2 at 122.270 kb on + strand, within ABZR86_RS18500 at 122.285 kb on + strand, within ABZR86_RS18500 at 123.014 kb on + strand, within ABZR86_RS18500 at 123.123 kb on - strand at 123.499 kb on - strand, within ABZR86_RS18505 at 123.499 kb on - strand, within ABZR86_RS18505 at 123.499 kb on - strand, within ABZR86_RS18505 at 123.650 kb on - strand, within ABZR86_RS18505 at 123.650 kb on - strand, within ABZR86_RS18505 at 123.650 kb on - strand, within ABZR86_RS18505 at 123.691 kb on + strand, within ABZR86_RS18505 at 123.691 kb on + strand, within ABZR86_RS18505 at 123.691 kb on + strand, within ABZR86_RS18505 at 123.692 kb on - strand, within ABZR86_RS18505 at 123.704 kb on - strand, within ABZR86_RS18505 at 123.742 kb on + strand, within ABZR86_RS18505 at 123.742 kb on + strand, within ABZR86_RS18505 at 123.743 kb on - strand, within ABZR86_RS18505 at 123.743 kb on - strand, within ABZR86_RS18505 at 123.743 kb on - strand, within ABZR86_RS18505 at 123.743 kb on - strand, within ABZR86_RS18505 at 124.012 kb on + strand, within ABZR86_RS18505 at 124.012 kb on + strand, within ABZR86_RS18505 at 124.012 kb on + strand, within ABZR86_RS18505 at 124.012 kb on + strand, within ABZR86_RS18505 at 124.192 kb on + strand at 124.193 kb on - strand at 124.195 kb on + strand at 124.195 kb on + strand at 124.195 kb on + strand at 124.195 kb on + strand at 124.272 kb on + strand at 124.333 kb on - strand at 124.368 kb on + strand, within ABZR86_RS18510 at 124.369 kb on - strand, within ABZR86_RS18510 at 124.369 kb on - strand, within ABZR86_RS18510 at 124.369 kb on - strand, within ABZR86_RS18510 at 124.461 kb on + strand, within ABZR86_RS18510 at 124.461 kb on + strand, within ABZR86_RS18510 at 124.461 kb on + strand, within ABZR86_RS18510 at 124.462 kb on - strand, within ABZR86_RS18510 at 124.462 kb on - strand, within ABZR86_RS18510 at 124.485 kb on + strand, within ABZR86_RS18510 at 124.486 kb on - strand, within ABZR86_RS18510 at 124.486 kb on - strand, within ABZR86_RS18510 at 124.486 kb on - strand, within ABZR86_RS18510 at 124.486 kb on - strand, within ABZR86_RS18510 at 124.486 kb on - strand, within ABZR86_RS18510 at 124.486 kb on - strand, within ABZR86_RS18510 at 124.502 kb on + strand, within ABZR86_RS18510 at 124.503 kb on - strand, within ABZR86_RS18510 at 124.503 kb on - strand, within ABZR86_RS18510 at 124.572 kb on - strand, within ABZR86_RS18510 at 124.619 kb on + strand, within ABZR86_RS18510 at 124.668 kb on - strand, within ABZR86_RS18510 at 124.716 kb on + strand, within ABZR86_RS18510 at 124.740 kb on + strand, within ABZR86_RS18510 at 125.042 kb on + strand, within ABZR86_RS18510 at 125.053 kb on - strand, within ABZR86_RS18510 at 125.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 122,270 + ABZR86_RS18500 0.27 -0.2 122,285 + ABZR86_RS18500 0.29 +0.0 123,014 + ABZR86_RS18500 0.86 -1.7 123,123 - +1.2 123,499 - ABZR86_RS18505 0.29 -0.5 123,499 - ABZR86_RS18505 0.29 +0.0 123,499 - ABZR86_RS18505 0.29 +0.6 123,650 - ABZR86_RS18505 0.43 +0.8 123,650 - ABZR86_RS18505 0.43 +1.5 123,650 - ABZR86_RS18505 0.43 -0.7 123,691 + ABZR86_RS18505 0.47 +0.8 123,691 + ABZR86_RS18505 0.47 +0.3 123,691 + ABZR86_RS18505 0.47 -0.0 123,692 - ABZR86_RS18505 0.47 +0.7 123,704 - ABZR86_RS18505 0.49 +0.6 123,742 + ABZR86_RS18505 0.52 -0.3 123,742 + ABZR86_RS18505 0.52 +0.2 123,743 - ABZR86_RS18505 0.52 -0.4 123,743 - ABZR86_RS18505 0.52 +1.6 123,743 - ABZR86_RS18505 0.52 -0.4 123,743 - ABZR86_RS18505 0.52 -0.6 124,012 + ABZR86_RS18505 0.78 +0.2 124,012 + ABZR86_RS18505 0.78 +0.1 124,012 + ABZR86_RS18505 0.78 +0.5 124,012 + ABZR86_RS18505 0.78 -0.3 124,192 + -1.5 124,193 - -0.4 124,195 + -1.6 124,195 + +0.4 124,195 + -0.3 124,195 + -0.2 124,272 + +0.0 124,333 - +0.2 124,368 + ABZR86_RS18510 0.14 -0.3 124,369 - ABZR86_RS18510 0.14 -1.2 124,369 - ABZR86_RS18510 0.14 -0.1 124,369 - ABZR86_RS18510 0.14 -0.6 124,461 + ABZR86_RS18510 0.23 +0.2 124,461 + ABZR86_RS18510 0.23 +0.4 124,461 + ABZR86_RS18510 0.23 -0.9 124,462 - ABZR86_RS18510 0.23 -0.1 124,462 - ABZR86_RS18510 0.23 +0.3 124,485 + ABZR86_RS18510 0.26 +0.1 124,486 - ABZR86_RS18510 0.26 +0.9 124,486 - ABZR86_RS18510 0.26 +0.5 124,486 - ABZR86_RS18510 0.26 +0.3 124,486 - ABZR86_RS18510 0.26 -0.4 124,486 - ABZR86_RS18510 0.26 +0.3 124,486 - ABZR86_RS18510 0.26 -0.2 124,502 + ABZR86_RS18510 0.28 +0.4 124,503 - ABZR86_RS18510 0.28 +2.2 124,503 - ABZR86_RS18510 0.28 +2.1 124,572 - ABZR86_RS18510 0.35 -0.2 124,619 + ABZR86_RS18510 0.40 -0.4 124,668 - ABZR86_RS18510 0.45 -0.5 124,716 + ABZR86_RS18510 0.50 +0.1 124,740 + ABZR86_RS18510 0.53 -0.6 125,042 + ABZR86_RS18510 0.84 -0.1 125,053 - ABZR86_RS18510 0.85 +0.3 125,161 - +0.3
Or see this region's nucleotide sequence