Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17900

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17890 and ABZR86_RS17895 are separated by 121 nucleotidesABZR86_RS17895 and ABZR86_RS17900 overlap by 11 nucleotidesABZR86_RS17900 and ABZR86_RS17905 are separated by 523 nucleotidesABZR86_RS17905 and ABZR86_RS17910 are separated by 74 nucleotides ABZR86_RS17890: ABZR86_RS17890 - type II CAAX endopeptidase family protein, at 4,032,607 to 4,034,448 _RS17890 ABZR86_RS17895: ABZR86_RS17895 - hypothetical protein, at 4,034,570 to 4,035,382 _RS17895 ABZR86_RS17900: ABZR86_RS17900 - prolyl oligopeptidase family serine peptidase, at 4,035,372 to 4,037,588 _RS17900 ABZR86_RS17905: ABZR86_RS17905 - DUF6229 family protein, at 4,038,112 to 4,038,300 _RS17905 ABZR86_RS17910: ABZR86_RS17910 - type 2 lanthipeptide synthetase LanM family protein, at 4,038,375 to 4,041,245 _RS17910 Position (kb) 4035 4036 4037 4038Strain fitness (log2 ratio) -2 -1 0 1 2at 4034.488 kb on + strandat 4034.507 kb on + strandat 4034.627 kb on + strandat 4034.628 kb on - strandat 4034.645 kb on + strandat 4034.646 kb on - strandat 4034.646 kb on - strandat 4034.798 kb on + strand, within ABZR86_RS17895at 4034.799 kb on - strand, within ABZR86_RS17895at 4034.799 kb on - strand, within ABZR86_RS17895at 4034.843 kb on + strand, within ABZR86_RS17895at 4034.844 kb on - strand, within ABZR86_RS17895at 4034.846 kb on + strand, within ABZR86_RS17895at 4034.846 kb on + strand, within ABZR86_RS17895at 4034.847 kb on - strand, within ABZR86_RS17895at 4034.847 kb on - strand, within ABZR86_RS17895at 4034.847 kb on - strand, within ABZR86_RS17895at 4034.953 kb on + strand, within ABZR86_RS17895at 4035.071 kb on + strand, within ABZR86_RS17895at 4035.222 kb on - strand, within ABZR86_RS17895at 4035.310 kb on - strandat 4035.381 kb on - strandat 4035.406 kb on + strandat 4035.407 kb on - strandat 4035.574 kb on - strandat 4035.622 kb on + strand, within ABZR86_RS17900at 4035.642 kb on - strand, within ABZR86_RS17900at 4035.642 kb on - strand, within ABZR86_RS17900at 4035.773 kb on - strand, within ABZR86_RS17900at 4035.773 kb on - strand, within ABZR86_RS17900at 4036.043 kb on - strand, within ABZR86_RS17900at 4036.051 kb on + strand, within ABZR86_RS17900at 4036.175 kb on - strand, within ABZR86_RS17900at 4036.235 kb on - strand, within ABZR86_RS17900at 4036.588 kb on + strand, within ABZR86_RS17900at 4036.589 kb on - strand, within ABZR86_RS17900at 4036.589 kb on - strand, within ABZR86_RS17900at 4036.696 kb on + strand, within ABZR86_RS17900at 4036.697 kb on - strand, within ABZR86_RS17900at 4036.934 kb on + strand, within ABZR86_RS17900at 4036.935 kb on - strand, within ABZR86_RS17900at 4036.935 kb on - strand, within ABZR86_RS17900at 4036.936 kb on + strand, within ABZR86_RS17900at 4036.936 kb on + strand, within ABZR86_RS17900at 4037.048 kb on + strand, within ABZR86_RS17900at 4037.610 kb on + strandat 4037.625 kb on - strandat 4037.652 kb on + strandat 4037.753 kb on - strandat 4037.798 kb on - strandat 4037.810 kb on - strandat 4038.104 kb on + strandat 4038.104 kb on + strandat 4038.105 kb on - strandat 4038.105 kb on - strandat 4038.194 kb on - strand, within ABZR86_RS17905at 4038.194 kb on - strand, within ABZR86_RS17905at 4038.194 kb on - strand, within ABZR86_RS17905at 4038.290 kb on - strandat 4038.290 kb on - strandat 4038.399 kb on - strandat 4038.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,034,488 + -0.4
4,034,507 + +0.3
4,034,627 + -0.7
4,034,628 - +0.7
4,034,645 + -0.7
4,034,646 - +0.1
4,034,646 - -0.3
4,034,798 + ABZR86_RS17895 0.28 +0.1
4,034,799 - ABZR86_RS17895 0.28 -0.1
4,034,799 - ABZR86_RS17895 0.28 +0.1
4,034,843 + ABZR86_RS17895 0.34 -0.2
4,034,844 - ABZR86_RS17895 0.34 -1.2
4,034,846 + ABZR86_RS17895 0.34 +0.2
4,034,846 + ABZR86_RS17895 0.34 +0.3
4,034,847 - ABZR86_RS17895 0.34 +0.3
4,034,847 - ABZR86_RS17895 0.34 +0.8
4,034,847 - ABZR86_RS17895 0.34 +0.8
4,034,953 + ABZR86_RS17895 0.47 -0.7
4,035,071 + ABZR86_RS17895 0.62 +0.4
4,035,222 - ABZR86_RS17895 0.80 +0.4
4,035,310 - -0.2
4,035,381 - +0.4
4,035,406 + +0.2
4,035,407 - -0.1
4,035,574 - -0.2
4,035,622 + ABZR86_RS17900 0.11 -0.7
4,035,642 - ABZR86_RS17900 0.12 -0.3
4,035,642 - ABZR86_RS17900 0.12 -0.8
4,035,773 - ABZR86_RS17900 0.18 -0.3
4,035,773 - ABZR86_RS17900 0.18 -0.1
4,036,043 - ABZR86_RS17900 0.30 -0.1
4,036,051 + ABZR86_RS17900 0.31 +1.1
4,036,175 - ABZR86_RS17900 0.36 +0.1
4,036,235 - ABZR86_RS17900 0.39 -0.4
4,036,588 + ABZR86_RS17900 0.55 -2.5
4,036,589 - ABZR86_RS17900 0.55 +1.0
4,036,589 - ABZR86_RS17900 0.55 -1.5
4,036,696 + ABZR86_RS17900 0.60 +1.0
4,036,697 - ABZR86_RS17900 0.60 -0.5
4,036,934 + ABZR86_RS17900 0.70 -0.3
4,036,935 - ABZR86_RS17900 0.71 +0.0
4,036,935 - ABZR86_RS17900 0.71 -1.4
4,036,936 + ABZR86_RS17900 0.71 -0.7
4,036,936 + ABZR86_RS17900 0.71 -0.3
4,037,048 + ABZR86_RS17900 0.76 +0.9
4,037,610 + +0.1
4,037,625 - -0.1
4,037,652 + +0.7
4,037,753 - -0.4
4,037,798 - +0.1
4,037,810 - -0.3
4,038,104 + -2.3
4,038,104 + +2.1
4,038,105 - -0.7
4,038,105 - -0.2
4,038,194 - ABZR86_RS17905 0.43 +0.4
4,038,194 - ABZR86_RS17905 0.43 -0.1
4,038,194 - ABZR86_RS17905 0.43 -0.8
4,038,290 - -0.0
4,038,290 - -0.6
4,038,399 - -0.8
4,038,421 - +0.9

Or see this region's nucleotide sequence