Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS11420 and ABZR86_RS11425 are separated by 227 nucleotides ABZR86_RS11425 and ABZR86_RS11430 overlap by 8 nucleotides ABZR86_RS11430 and ABZR86_RS11435 are separated by 67 nucleotides
ABZR86_RS11420: ABZR86_RS11420 - lytic transglycosylase domain-containing protein, at 2,549,549 to 2,550,586
_RS11420
ABZR86_RS11425: ABZR86_RS11425 - TrbC/VirB2 family protein, at 2,550,814 to 2,551,155
_RS11425
ABZR86_RS11430: ABZR86_RS11430 - VirB3 family type IV secretion system protein, at 2,551,148 to 2,551,453
_RS11430
ABZR86_RS11435: ABZR86_RS11435 - VirB4 family type IV secretion/conjugal transfer ATPase, at 2,551,521 to 2,553,995
_RS11435
Position (kb)
2550
2551
2552 Strain fitness (log2 ratio)
-1
0
1 at 2549.867 kb on + strand, within ABZR86_RS11420 at 2549.867 kb on + strand, within ABZR86_RS11420 at 2549.867 kb on + strand, within ABZR86_RS11420 at 2549.867 kb on + strand, within ABZR86_RS11420 at 2549.912 kb on + strand, within ABZR86_RS11420 at 2549.912 kb on + strand, within ABZR86_RS11420 at 2549.912 kb on + strand, within ABZR86_RS11420 at 2549.913 kb on - strand, within ABZR86_RS11420 at 2549.949 kb on - strand, within ABZR86_RS11420 at 2550.107 kb on + strand, within ABZR86_RS11420 at 2550.706 kb on + strand at 2550.706 kb on + strand at 2550.707 kb on - strand at 2551.147 kb on + strand at 2551.147 kb on + strand at 2551.147 kb on + strand at 2551.147 kb on + strand at 2551.148 kb on - strand at 2551.148 kb on - strand at 2551.153 kb on + strand at 2551.153 kb on + strand at 2551.153 kb on + strand at 2551.154 kb on - strand at 2551.154 kb on - strand at 2551.208 kb on + strand, within ABZR86_RS11430 at 2551.209 kb on - strand, within ABZR86_RS11430 at 2551.209 kb on - strand, within ABZR86_RS11430 at 2551.257 kb on - strand, within ABZR86_RS11430 at 2551.257 kb on - strand, within ABZR86_RS11430 at 2551.257 kb on - strand, within ABZR86_RS11430 at 2551.451 kb on + strand at 2551.451 kb on + strand at 2551.451 kb on + strand at 2551.573 kb on + strand at 2551.573 kb on + strand at 2551.824 kb on + strand, within ABZR86_RS11435 at 2551.825 kb on - strand, within ABZR86_RS11435 at 2551.825 kb on - strand, within ABZR86_RS11435 at 2551.828 kb on - strand, within ABZR86_RS11435 at 2551.828 kb on - strand, within ABZR86_RS11435 at 2551.828 kb on - strand, within ABZR86_RS11435 at 2551.828 kb on - strand, within ABZR86_RS11435 at 2551.869 kb on + strand, within ABZR86_RS11435 at 2551.869 kb on + strand, within ABZR86_RS11435 at 2551.869 kb on + strand, within ABZR86_RS11435 at 2551.885 kb on - strand, within ABZR86_RS11435 at 2551.885 kb on - strand, within ABZR86_RS11435 at 2552.016 kb on + strand, within ABZR86_RS11435 at 2552.016 kb on + strand, within ABZR86_RS11435 at 2552.040 kb on + strand, within ABZR86_RS11435 at 2552.040 kb on + strand, within ABZR86_RS11435 at 2552.041 kb on - strand, within ABZR86_RS11435 at 2552.041 kb on - strand, within ABZR86_RS11435 at 2552.041 kb on - strand, within ABZR86_RS11435 at 2552.041 kb on - strand, within ABZR86_RS11435 at 2552.041 kb on - strand, within ABZR86_RS11435 at 2552.143 kb on - strand, within ABZR86_RS11435 at 2552.148 kb on + strand, within ABZR86_RS11435
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 2,549,867 + ABZR86_RS11420 0.31 -1.2 2,549,867 + ABZR86_RS11420 0.31 +0.2 2,549,867 + ABZR86_RS11420 0.31 -0.1 2,549,867 + ABZR86_RS11420 0.31 +0.5 2,549,912 + ABZR86_RS11420 0.35 -0.1 2,549,912 + ABZR86_RS11420 0.35 -0.6 2,549,912 + ABZR86_RS11420 0.35 +0.2 2,549,913 - ABZR86_RS11420 0.35 +0.2 2,549,949 - ABZR86_RS11420 0.39 -0.5 2,550,107 + ABZR86_RS11420 0.54 +1.0 2,550,706 + +0.1 2,550,706 + -1.2 2,550,707 - -0.2 2,551,147 + -0.2 2,551,147 + -0.2 2,551,147 + +0.3 2,551,147 + -1.2 2,551,148 - -0.3 2,551,148 - -0.7 2,551,153 + -0.3 2,551,153 + +0.1 2,551,153 + +0.6 2,551,154 - +1.3 2,551,154 - -0.4 2,551,208 + ABZR86_RS11430 0.20 +0.6 2,551,209 - ABZR86_RS11430 0.20 -0.4 2,551,209 - ABZR86_RS11430 0.20 +0.1 2,551,257 - ABZR86_RS11430 0.36 -0.3 2,551,257 - ABZR86_RS11430 0.36 -0.8 2,551,257 - ABZR86_RS11430 0.36 +0.6 2,551,451 + -1.1 2,551,451 + -0.1 2,551,451 + -1.1 2,551,573 + +0.7 2,551,573 + +0.4 2,551,824 + ABZR86_RS11435 0.12 -0.2 2,551,825 - ABZR86_RS11435 0.12 -0.8 2,551,825 - ABZR86_RS11435 0.12 +0.9 2,551,828 - ABZR86_RS11435 0.12 +0.1 2,551,828 - ABZR86_RS11435 0.12 +0.3 2,551,828 - ABZR86_RS11435 0.12 +0.2 2,551,828 - ABZR86_RS11435 0.12 +0.9 2,551,869 + ABZR86_RS11435 0.14 +0.8 2,551,869 + ABZR86_RS11435 0.14 -0.1 2,551,869 + ABZR86_RS11435 0.14 -0.6 2,551,885 - ABZR86_RS11435 0.15 +1.4 2,551,885 - ABZR86_RS11435 0.15 +0.7 2,552,016 + ABZR86_RS11435 0.20 -0.2 2,552,016 + ABZR86_RS11435 0.20 +0.4 2,552,040 + ABZR86_RS11435 0.21 -0.0 2,552,040 + ABZR86_RS11435 0.21 -1.7 2,552,041 - ABZR86_RS11435 0.21 +0.3 2,552,041 - ABZR86_RS11435 0.21 -0.6 2,552,041 - ABZR86_RS11435 0.21 +0.0 2,552,041 - ABZR86_RS11435 0.21 -0.8 2,552,041 - ABZR86_RS11435 0.21 -0.0 2,552,143 - ABZR86_RS11435 0.25 -0.1 2,552,148 + ABZR86_RS11435 0.25 +0.1
Or see this region's nucleotide sequence