Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09760

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09750 and ABZR86_RS09755 are separated by 150 nucleotidesABZR86_RS09755 and ABZR86_RS09760 are separated by 93 nucleotidesABZR86_RS09760 and ABZR86_RS09765 are separated by 128 nucleotides ABZR86_RS09750: ABZR86_RS09750 - excinuclease ABC subunit UvrB, at 2,166,022 to 2,168,043 _RS09750 ABZR86_RS09755: ABZR86_RS09755 - GspH/FimT family pseudopilin, at 2,168,194 to 2,168,745 _RS09755 ABZR86_RS09760: ABZR86_RS09760 - RidA family protein, at 2,168,839 to 2,169,234 _RS09760 ABZR86_RS09765: ABZR86_RS09765 - LysR family transcriptional regulator, at 2,169,363 to 2,170,277 _RS09765 Position (kb) 2168 2169 2170Strain fitness (log2 ratio) -1 0 1 2at 2167.876 kb on + strandat 2167.876 kb on + strandat 2168.075 kb on + strandat 2168.076 kb on - strandat 2168.113 kb on + strandat 2168.113 kb on + strandat 2168.114 kb on - strandat 2168.114 kb on - strandat 2168.161 kb on + strandat 2168.161 kb on + strandat 2168.161 kb on + strandat 2168.161 kb on + strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.162 kb on - strandat 2168.419 kb on - strand, within ABZR86_RS09755at 2168.693 kb on + strandat 2168.694 kb on - strandat 2168.694 kb on - strandat 2168.694 kb on - strandat 2168.729 kb on + strandat 2168.730 kb on - strandat 2168.730 kb on - strandat 2168.730 kb on - strandat 2168.942 kb on + strand, within ABZR86_RS09760at 2168.942 kb on + strand, within ABZR86_RS09760at 2168.943 kb on - strand, within ABZR86_RS09760at 2168.943 kb on - strand, within ABZR86_RS09760at 2168.996 kb on + strand, within ABZR86_RS09760at 2169.004 kb on + strand, within ABZR86_RS09760at 2169.004 kb on + strand, within ABZR86_RS09760at 2169.004 kb on + strand, within ABZR86_RS09760at 2169.005 kb on - strand, within ABZR86_RS09760at 2169.005 kb on - strand, within ABZR86_RS09760at 2169.005 kb on - strand, within ABZR86_RS09760at 2169.005 kb on - strand, within ABZR86_RS09760at 2169.173 kb on + strand, within ABZR86_RS09760at 2169.189 kb on - strand, within ABZR86_RS09760at 2169.189 kb on - strand, within ABZR86_RS09760at 2169.189 kb on - strand, within ABZR86_RS09760at 2169.189 kb on - strand, within ABZR86_RS09760at 2169.276 kb on + strandat 2169.276 kb on + strandat 2169.277 kb on - strandat 2169.277 kb on - strandat 2169.277 kb on - strandat 2169.297 kb on + strandat 2169.328 kb on - strandat 2169.556 kb on - strand, within ABZR86_RS09765at 2169.558 kb on + strand, within ABZR86_RS09765at 2169.558 kb on + strand, within ABZR86_RS09765at 2169.558 kb on + strand, within ABZR86_RS09765at 2169.559 kb on - strand, within ABZR86_RS09765at 2169.628 kb on + strand, within ABZR86_RS09765at 2169.628 kb on + strand, within ABZR86_RS09765at 2169.628 kb on + strand, within ABZR86_RS09765at 2169.629 kb on - strand, within ABZR86_RS09765at 2169.714 kb on + strand, within ABZR86_RS09765at 2169.833 kb on + strand, within ABZR86_RS09765at 2169.858 kb on + strand, within ABZR86_RS09765at 2169.858 kb on + strand, within ABZR86_RS09765at 2169.858 kb on + strand, within ABZR86_RS09765at 2169.858 kb on + strand, within ABZR86_RS09765at 2169.859 kb on - strand, within ABZR86_RS09765at 2169.859 kb on - strand, within ABZR86_RS09765at 2169.859 kb on - strand, within ABZR86_RS09765at 2169.874 kb on - strand, within ABZR86_RS09765at 2169.943 kb on - strand, within ABZR86_RS09765at 2169.943 kb on - strand, within ABZR86_RS09765at 2169.943 kb on - strand, within ABZR86_RS09765at 2169.943 kb on - strand, within ABZR86_RS09765at 2169.943 kb on - strand, within ABZR86_RS09765at 2169.975 kb on + strand, within ABZR86_RS09765at 2169.975 kb on + strand, within ABZR86_RS09765at 2169.975 kb on + strand, within ABZR86_RS09765at 2169.976 kb on - strand, within ABZR86_RS09765at 2170.003 kb on + strand, within ABZR86_RS09765at 2170.050 kb on + strand, within ABZR86_RS09765at 2170.050 kb on + strand, within ABZR86_RS09765at 2170.050 kb on + strand, within ABZR86_RS09765at 2170.050 kb on + strand, within ABZR86_RS09765at 2170.051 kb on - strand, within ABZR86_RS09765at 2170.051 kb on - strand, within ABZR86_RS09765at 2170.098 kb on + strand, within ABZR86_RS09765at 2170.099 kb on - strand, within ABZR86_RS09765at 2170.099 kb on - strand, within ABZR86_RS09765at 2170.099 kb on - strand, within ABZR86_RS09765at 2170.099 kb on - strand, within ABZR86_RS09765at 2170.099 kb on - strand, within ABZR86_RS09765at 2170.099 kb on - strand, within ABZR86_RS09765at 2170.099 kb on - strand, within ABZR86_RS09765at 2170.177 kb on - strand, within ABZR86_RS09765at 2170.204 kb on + strandat 2170.204 kb on + strandat 2170.204 kb on + strandat 2170.204 kb on + strandat 2170.205 kb on - strandat 2170.205 kb on - strandat 2170.205 kb on - strandat 2170.205 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,167,876 + +1.0
2,167,876 + -0.2
2,168,075 + -0.9
2,168,076 - +0.1
2,168,113 + -0.2
2,168,113 + +0.2
2,168,114 - +0.1
2,168,114 - -0.3
2,168,161 + -0.5
2,168,161 + +0.1
2,168,161 + -0.4
2,168,161 + -1.5
2,168,162 - -0.1
2,168,162 - -0.8
2,168,162 - -1.1
2,168,162 - +0.2
2,168,162 - -0.6
2,168,162 - -0.1
2,168,162 - +0.3
2,168,162 - +0.9
2,168,162 - -1.7
2,168,162 - -1.4
2,168,162 - -0.6
2,168,419 - ABZR86_RS09755 0.41 +0.1
2,168,693 + +0.8
2,168,694 - +1.0
2,168,694 - +0.4
2,168,694 - +0.4
2,168,729 + -0.0
2,168,730 - +0.1
2,168,730 - -0.3
2,168,730 - +0.4
2,168,942 + ABZR86_RS09760 0.26 +0.6
2,168,942 + ABZR86_RS09760 0.26 +2.5
2,168,943 - ABZR86_RS09760 0.26 -0.5
2,168,943 - ABZR86_RS09760 0.26 +0.7
2,168,996 + ABZR86_RS09760 0.40 -0.5
2,169,004 + ABZR86_RS09760 0.42 +0.1
2,169,004 + ABZR86_RS09760 0.42 +0.2
2,169,004 + ABZR86_RS09760 0.42 +0.4
2,169,005 - ABZR86_RS09760 0.42 +0.8
2,169,005 - ABZR86_RS09760 0.42 +0.5
2,169,005 - ABZR86_RS09760 0.42 +1.3
2,169,005 - ABZR86_RS09760 0.42 +0.2
2,169,173 + ABZR86_RS09760 0.84 +0.0
2,169,189 - ABZR86_RS09760 0.88 +0.5
2,169,189 - ABZR86_RS09760 0.88 -0.9
2,169,189 - ABZR86_RS09760 0.88 +1.0
2,169,189 - ABZR86_RS09760 0.88 +0.0
2,169,276 + -0.2
2,169,276 + +0.2
2,169,277 - +0.5
2,169,277 - -0.2
2,169,277 - +0.4
2,169,297 + -0.5
2,169,328 - -0.1
2,169,556 - ABZR86_RS09765 0.21 -0.4
2,169,558 + ABZR86_RS09765 0.21 +0.2
2,169,558 + ABZR86_RS09765 0.21 -0.2
2,169,558 + ABZR86_RS09765 0.21 +0.3
2,169,559 - ABZR86_RS09765 0.21 -0.1
2,169,628 + ABZR86_RS09765 0.29 -0.2
2,169,628 + ABZR86_RS09765 0.29 -0.4
2,169,628 + ABZR86_RS09765 0.29 -0.1
2,169,629 - ABZR86_RS09765 0.29 +0.2
2,169,714 + ABZR86_RS09765 0.38 -0.9
2,169,833 + ABZR86_RS09765 0.51 -0.1
2,169,858 + ABZR86_RS09765 0.54 -0.7
2,169,858 + ABZR86_RS09765 0.54 +0.4
2,169,858 + ABZR86_RS09765 0.54 +0.8
2,169,858 + ABZR86_RS09765 0.54 +1.4
2,169,859 - ABZR86_RS09765 0.54 +0.4
2,169,859 - ABZR86_RS09765 0.54 -0.1
2,169,859 - ABZR86_RS09765 0.54 -0.7
2,169,874 - ABZR86_RS09765 0.56 -0.9
2,169,943 - ABZR86_RS09765 0.63 -0.5
2,169,943 - ABZR86_RS09765 0.63 -0.5
2,169,943 - ABZR86_RS09765 0.63 +0.3
2,169,943 - ABZR86_RS09765 0.63 +0.1
2,169,943 - ABZR86_RS09765 0.63 +0.2
2,169,975 + ABZR86_RS09765 0.67 -1.3
2,169,975 + ABZR86_RS09765 0.67 +0.2
2,169,975 + ABZR86_RS09765 0.67 +0.0
2,169,976 - ABZR86_RS09765 0.67 +0.8
2,170,003 + ABZR86_RS09765 0.70 -0.2
2,170,050 + ABZR86_RS09765 0.75 -0.2
2,170,050 + ABZR86_RS09765 0.75 +0.6
2,170,050 + ABZR86_RS09765 0.75 -0.5
2,170,050 + ABZR86_RS09765 0.75 +1.1
2,170,051 - ABZR86_RS09765 0.75 +0.3
2,170,051 - ABZR86_RS09765 0.75 +0.8
2,170,098 + ABZR86_RS09765 0.80 -1.0
2,170,099 - ABZR86_RS09765 0.80 +0.8
2,170,099 - ABZR86_RS09765 0.80 -0.1
2,170,099 - ABZR86_RS09765 0.80 -0.6
2,170,099 - ABZR86_RS09765 0.80 -0.1
2,170,099 - ABZR86_RS09765 0.80 -0.6
2,170,099 - ABZR86_RS09765 0.80 -0.9
2,170,099 - ABZR86_RS09765 0.80 -0.6
2,170,177 - ABZR86_RS09765 0.89 +0.0
2,170,204 + +0.2
2,170,204 + -0.3
2,170,204 + -0.1
2,170,204 + +0.4
2,170,205 - -0.3
2,170,205 - +0.6
2,170,205 - +0.4
2,170,205 - -0.3

Or see this region's nucleotide sequence