Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08135

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08130 and ABZR86_RS08135 are separated by 355 nucleotidesABZR86_RS08135 and ABZR86_RS08140 are separated by 78 nucleotides ABZR86_RS08130: ABZR86_RS08130 - dCTP deaminase, at 1,813,575 to 1,814,141 _RS08130 ABZR86_RS08135: ABZR86_RS08135 - hypothetical protein, at 1,814,497 to 1,815,096 _RS08135 ABZR86_RS08140: ABZR86_RS08140 - iron-sulfur cluster carrier protein ApbC, at 1,815,175 to 1,816,269 _RS08140 Position (kb) 1814 1815 1816Strain fitness (log2 ratio) -2 -1 0 1at 1813.500 kb on + strandat 1813.500 kb on + strandat 1813.501 kb on - strandat 1813.501 kb on - strandat 1813.612 kb on + strandat 1813.612 kb on + strandat 1813.612 kb on + strandat 1813.613 kb on - strandat 1813.613 kb on - strandat 1813.613 kb on - strandat 1813.696 kb on + strand, within ABZR86_RS08130at 1813.696 kb on + strand, within ABZR86_RS08130at 1813.697 kb on - strand, within ABZR86_RS08130at 1813.697 kb on - strand, within ABZR86_RS08130at 1813.801 kb on + strand, within ABZR86_RS08130at 1813.801 kb on + strand, within ABZR86_RS08130at 1813.802 kb on - strand, within ABZR86_RS08130at 1813.802 kb on - strand, within ABZR86_RS08130at 1813.852 kb on + strand, within ABZR86_RS08130at 1813.853 kb on - strand, within ABZR86_RS08130at 1813.853 kb on - strand, within ABZR86_RS08130at 1813.853 kb on - strand, within ABZR86_RS08130at 1813.967 kb on + strand, within ABZR86_RS08130at 1813.967 kb on + strand, within ABZR86_RS08130at 1813.967 kb on + strand, within ABZR86_RS08130at 1813.968 kb on - strand, within ABZR86_RS08130at 1813.968 kb on - strand, within ABZR86_RS08130at 1814.009 kb on - strand, within ABZR86_RS08130at 1814.014 kb on + strand, within ABZR86_RS08130at 1814.015 kb on - strand, within ABZR86_RS08130at 1814.029 kb on + strand, within ABZR86_RS08130at 1814.029 kb on + strand, within ABZR86_RS08130at 1814.030 kb on - strand, within ABZR86_RS08130at 1814.077 kb on + strand, within ABZR86_RS08130at 1814.077 kb on + strand, within ABZR86_RS08130at 1814.077 kb on + strand, within ABZR86_RS08130at 1814.078 kb on - strand, within ABZR86_RS08130at 1814.078 kb on - strand, within ABZR86_RS08130at 1814.207 kb on + strandat 1814.207 kb on + strandat 1814.397 kb on + strandat 1814.800 kb on + strand, within ABZR86_RS08135at 1815.095 kb on - strandat 1815.157 kb on + strandat 1815.157 kb on + strandat 1815.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,813,500 + -0.3
1,813,500 + -0.5
1,813,501 - +0.1
1,813,501 - +0.3
1,813,612 + +0.3
1,813,612 + +0.7
1,813,612 + +0.7
1,813,613 - -0.5
1,813,613 - +0.7
1,813,613 - +0.3
1,813,696 + ABZR86_RS08130 0.21 +1.4
1,813,696 + ABZR86_RS08130 0.21 +0.6
1,813,697 - ABZR86_RS08130 0.22 -0.3
1,813,697 - ABZR86_RS08130 0.22 +0.5
1,813,801 + ABZR86_RS08130 0.40 +0.4
1,813,801 + ABZR86_RS08130 0.40 +1.6
1,813,802 - ABZR86_RS08130 0.40 -0.0
1,813,802 - ABZR86_RS08130 0.40 +0.7
1,813,852 + ABZR86_RS08130 0.49 +1.3
1,813,853 - ABZR86_RS08130 0.49 -0.5
1,813,853 - ABZR86_RS08130 0.49 +0.5
1,813,853 - ABZR86_RS08130 0.49 +1.0
1,813,967 + ABZR86_RS08130 0.69 +0.2
1,813,967 + ABZR86_RS08130 0.69 +0.2
1,813,967 + ABZR86_RS08130 0.69 +0.1
1,813,968 - ABZR86_RS08130 0.69 -0.3
1,813,968 - ABZR86_RS08130 0.69 +1.3
1,814,009 - ABZR86_RS08130 0.77 -0.0
1,814,014 + ABZR86_RS08130 0.77 +1.2
1,814,015 - ABZR86_RS08130 0.78 +1.4
1,814,029 + ABZR86_RS08130 0.80 -1.0
1,814,029 + ABZR86_RS08130 0.80 +1.2
1,814,030 - ABZR86_RS08130 0.80 +1.4
1,814,077 + ABZR86_RS08130 0.89 +0.7
1,814,077 + ABZR86_RS08130 0.89 +1.1
1,814,077 + ABZR86_RS08130 0.89 +0.8
1,814,078 - ABZR86_RS08130 0.89 +0.2
1,814,078 - ABZR86_RS08130 0.89 +0.5
1,814,207 + -0.1
1,814,207 + +0.1
1,814,397 + +0.0
1,814,800 + ABZR86_RS08135 0.51 +0.0
1,815,095 - +0.4
1,815,157 + -0.9
1,815,157 + -2.2
1,815,158 - +1.6

Or see this region's nucleotide sequence