Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03435

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS03425 and ABZR86_RS03430 are separated by 40 nucleotidesABZR86_RS03430 and ABZR86_RS03435 are separated by 151 nucleotidesABZR86_RS03435 and ABZR86_RS03440 are separated by 63 nucleotidesABZR86_RS03440 and ABZR86_RS03445 are separated by 160 nucleotides ABZR86_RS03425: ABZR86_RS03425 - hypothetical protein, at 731,056 to 731,727 _RS03425 ABZR86_RS03430: ABZR86_RS03430 - putative quinol monooxygenase, at 731,768 to 732,073 _RS03430 ABZR86_RS03435: ABZR86_RS03435 - GTP cyclohydrolase II, at 732,225 to 732,881 _RS03435 ABZR86_RS03440: ABZR86_RS03440 - DoxX family protein, at 732,945 to 733,361 _RS03440 ABZR86_RS03445: ABZR86_RS03445 - TetR/AcrR family transcriptional regulator, at 733,522 to 734,160 _RS03445 Position (kb) 732 733Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 731.512 kb on + strand, within ABZR86_RS03425at 731.977 kb on + strand, within ABZR86_RS03430at 731.978 kb on - strand, within ABZR86_RS03430at 732.145 kb on + strandat 732.145 kb on + strandat 732.145 kb on + strandat 732.146 kb on - strandat 732.302 kb on + strand, within ABZR86_RS03435at 732.302 kb on + strand, within ABZR86_RS03435at 732.303 kb on - strand, within ABZR86_RS03435at 732.493 kb on + strand, within ABZR86_RS03435at 732.493 kb on + strand, within ABZR86_RS03435at 732.493 kb on + strand, within ABZR86_RS03435at 732.493 kb on + strand, within ABZR86_RS03435at 732.494 kb on - strand, within ABZR86_RS03435at 732.542 kb on - strand, within ABZR86_RS03435at 732.572 kb on + strand, within ABZR86_RS03435at 732.572 kb on + strand, within ABZR86_RS03435at 732.572 kb on + strand, within ABZR86_RS03435at 732.573 kb on - strand, within ABZR86_RS03435at 732.574 kb on + strand, within ABZR86_RS03435at 732.574 kb on + strand, within ABZR86_RS03435at 732.574 kb on + strand, within ABZR86_RS03435at 732.574 kb on + strand, within ABZR86_RS03435at 732.574 kb on + strand, within ABZR86_RS03435at 732.575 kb on - strand, within ABZR86_RS03435at 732.575 kb on - strand, within ABZR86_RS03435at 732.583 kb on + strand, within ABZR86_RS03435at 732.769 kb on + strand, within ABZR86_RS03435at 732.769 kb on + strand, within ABZR86_RS03435at 732.770 kb on - strand, within ABZR86_RS03435at 732.770 kb on - strand, within ABZR86_RS03435at 732.770 kb on - strand, within ABZR86_RS03435at 732.770 kb on - strand, within ABZR86_RS03435at 732.917 kb on + strandat 732.917 kb on + strandat 733.681 kb on + strand, within ABZR86_RS03445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
731,512 + ABZR86_RS03425 0.68 -0.3
731,977 + ABZR86_RS03430 0.68 +0.2
731,978 - ABZR86_RS03430 0.69 -2.3
732,145 + +0.1
732,145 + -1.0
732,145 + -0.3
732,146 - +1.9
732,302 + ABZR86_RS03435 0.12 -1.9
732,302 + ABZR86_RS03435 0.12 -1.3
732,303 - ABZR86_RS03435 0.12 -3.2
732,493 + ABZR86_RS03435 0.41 -1.3
732,493 + ABZR86_RS03435 0.41 -2.7
732,493 + ABZR86_RS03435 0.41 -3.1
732,493 + ABZR86_RS03435 0.41 -3.7
732,494 - ABZR86_RS03435 0.41 -0.5
732,542 - ABZR86_RS03435 0.48 -1.5
732,572 + ABZR86_RS03435 0.53 -2.3
732,572 + ABZR86_RS03435 0.53 -2.4
732,572 + ABZR86_RS03435 0.53 -2.9
732,573 - ABZR86_RS03435 0.53 -1.0
732,574 + ABZR86_RS03435 0.53 -2.7
732,574 + ABZR86_RS03435 0.53 -2.8
732,574 + ABZR86_RS03435 0.53 -0.9
732,574 + ABZR86_RS03435 0.53 -2.0
732,574 + ABZR86_RS03435 0.53 -2.8
732,575 - ABZR86_RS03435 0.53 -3.2
732,575 - ABZR86_RS03435 0.53 -2.7
732,583 + ABZR86_RS03435 0.54 -2.5
732,769 + ABZR86_RS03435 0.83 -1.8
732,769 + ABZR86_RS03435 0.83 -2.9
732,770 - ABZR86_RS03435 0.83 -1.0
732,770 - ABZR86_RS03435 0.83 -1.8
732,770 - ABZR86_RS03435 0.83 -4.0
732,770 - ABZR86_RS03435 0.83 +0.9
732,917 + +0.0
732,917 + -0.0
733,681 + ABZR86_RS03445 0.25 +0.1

Or see this region's nucleotide sequence