Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03055 and SMc03056 are separated by 4 nucleotides SMc03056 and SMc03071 are separated by 98 nucleotides SMc03071 and SMc03072 are separated by 125 nucleotides SMc03072 and SMc03057 overlap by 1 nucleotides
SMc03055: SMc03055 - flagellar biosynthesis protein FliR, at 750,684 to 751,436
SMc03055
SMc03056: SMc03056 - hypothetical protein, at 751,441 to 751,854
SMc03056
SMc03071: SMc03071 - hypothetical protein, at 751,953 to 752,507
SMc03071
SMc03072: SMc03072 - hypothetical protein, at 752,633 to 753,001
SMc03072
SMc03057: SMc03057 - hypothetical protein, at 753,001 to 753,567
SMc03057
Position (kb) 751
752
753 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 751.037 kb on + strand, within SMc03055 at 751.257 kb on + strand, within SMc03055 at 751.312 kb on + strand, within SMc03055 at 751.312 kb on + strand, within SMc03055 at 751.313 kb on - strand, within SMc03055 at 751.313 kb on - strand, within SMc03055 at 751.320 kb on + strand, within SMc03055 at 751.321 kb on - strand, within SMc03055 at 751.321 kb on - strand, within SMc03055 at 751.338 kb on + strand, within SMc03055 at 751.339 kb on - strand, within SMc03055 at 751.621 kb on + strand, within SMc03056 at 751.621 kb on + strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.695 kb on + strand, within SMc03056 at 751.695 kb on + strand, within SMc03056 at 751.696 kb on - strand, within SMc03056 at 751.836 kb on + strand at 751.852 kb on + strand at 751.853 kb on - strand at 751.855 kb on + strand at 751.952 kb on + strand at 751.953 kb on - strand at 751.953 kb on - strand at 751.958 kb on + strand at 751.958 kb on + strand at 751.958 kb on + strand at 751.959 kb on - strand at 751.959 kb on - strand at 752.368 kb on + strand, within SMc03071 at 752.448 kb on + strand, within SMc03071 at 752.449 kb on - strand, within SMc03071 at 752.544 kb on + strand at 752.545 kb on - strand at 752.552 kb on + strand at 752.552 kb on + strand at 752.552 kb on + strand at 752.553 kb on - strand at 752.619 kb on + strand at 752.619 kb on + strand at 752.632 kb on + strand at 752.777 kb on + strand, within SMc03072 at 752.778 kb on - strand, within SMc03072 at 752.967 kb on - strand at 752.967 kb on - strand at 752.967 kb on - strand at 752.967 kb on - strand at 752.968 kb on + strand at 752.968 kb on + strand at 753.058 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.149 kb on + strand, within SMc03057 at 753.187 kb on + strand, within SMc03057 at 753.188 kb on - strand, within SMc03057 at 753.188 kb on - strand, within SMc03057 at 753.229 kb on - strand, within SMc03057 at 753.277 kb on + strand, within SMc03057 at 753.277 kb on + strand, within SMc03057 at 753.278 kb on - strand, within SMc03057 at 753.424 kb on + strand, within SMc03057 at 753.425 kb on - strand, within SMc03057 at 753.425 kb on - strand, within SMc03057 at 753.475 kb on + strand, within SMc03057
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 751,037 + SMc03055 0.47 -0.1 751,257 + SMc03055 0.76 +0.1 751,312 + SMc03055 0.83 +0.5 751,312 + SMc03055 0.83 +0.4 751,313 - SMc03055 0.84 +0.7 751,313 - SMc03055 0.84 -0.1 751,320 + SMc03055 0.84 -2.2 751,321 - SMc03055 0.85 -1.0 751,321 - SMc03055 0.85 -0.2 751,338 + SMc03055 0.87 +0.1 751,339 - SMc03055 0.87 -0.4 751,621 + SMc03056 0.43 -0.1 751,621 + SMc03056 0.43 +2.1 751,622 - SMc03056 0.44 +0.0 751,622 - SMc03056 0.44 +0.1 751,622 - SMc03056 0.44 +1.6 751,695 + SMc03056 0.61 +0.2 751,695 + SMc03056 0.61 -1.5 751,696 - SMc03056 0.62 +1.1 751,836 + -0.3 751,852 + -0.9 751,853 - +0.1 751,855 + +0.7 751,952 + -0.1 751,953 - -1.2 751,953 - -1.4 751,958 + +0.5 751,958 + +0.2 751,958 + -0.2 751,959 - +0.4 751,959 - +0.9 752,368 + SMc03071 0.75 +0.5 752,448 + SMc03071 0.89 -0.7 752,449 - SMc03071 0.89 -0.1 752,544 + +0.5 752,545 - +0.3 752,552 + +0.9 752,552 + +0.2 752,552 + +0.3 752,553 - -2.0 752,619 + -2.0 752,619 + +0.1 752,632 + -0.2 752,777 + SMc03072 0.39 +1.3 752,778 - SMc03072 0.39 -4.5 752,967 - -1.1 752,967 - +0.1 752,967 - +0.6 752,967 - -0.3 752,968 + -0.1 752,968 + +0.0 753,058 + SMc03057 0.10 +0.3 753,130 + SMc03057 0.23 -0.1 753,130 + SMc03057 0.23 -1.8 753,130 + SMc03057 0.23 +1.8 753,130 + SMc03057 0.23 -1.8 753,130 + SMc03057 0.23 -1.6 753,131 - SMc03057 0.23 -0.2 753,131 - SMc03057 0.23 -3.3 753,131 - SMc03057 0.23 -1.8 753,131 - SMc03057 0.23 +0.6 753,149 + SMc03057 0.26 -0.4 753,187 + SMc03057 0.33 +0.1 753,188 - SMc03057 0.33 +0.5 753,188 - SMc03057 0.33 -1.1 753,229 - SMc03057 0.40 +0.2 753,277 + SMc03057 0.49 -0.8 753,277 + SMc03057 0.49 +2.0 753,278 - SMc03057 0.49 +0.5 753,424 + SMc03057 0.75 +0.4 753,425 - SMc03057 0.75 -0.0 753,425 - SMc03057 0.75 +0.5 753,475 + SMc03057 0.84 +0.1
Or see this region's nucleotide sequence