Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03068 and SMc03069 are separated by 91 nucleotides SMc03069 and SMc03070 are separated by 8 nucleotides SMc03070 and SMc00761 are separated by 196 nucleotides
SMc03068: SMc03068 - phosphogluconate dehydratase, at 766,634 to 768,454
SMc03068
SMc03069: SMc03069 - 6-phosphogluconolactonase, at 768,546 to 769,244
SMc03069
SMc03070: SMc03070 - glucose-6-phosphate 1-dehydrogenase, at 769,253 to 770,728
SMc03070
SMc00761: SMc00761 - oxidoreductase, at 770,925 to 772,211
SMc00761
Position (kb) 769
770
771 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 768.382 kb on - strand at 768.424 kb on + strand at 768.435 kb on - strand at 768.478 kb on + strand at 768.559 kb on + strand at 768.559 kb on + strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.561 kb on + strand at 768.561 kb on + strand at 768.561 kb on + strand at 768.562 kb on - strand at 768.685 kb on + strand, within SMc03069 at 768.827 kb on + strand, within SMc03069 at 768.827 kb on + strand, within SMc03069 at 769.254 kb on + strand at 769.254 kb on + strand at 769.330 kb on + strand at 769.331 kb on - strand at 769.467 kb on + strand, within SMc03070 at 769.722 kb on + strand, within SMc03070 at 769.722 kb on + strand, within SMc03070 at 769.818 kb on + strand, within SMc03070 at 770.002 kb on + strand, within SMc03070 at 770.046 kb on + strand, within SMc03070 at 770.130 kb on + strand, within SMc03070 at 770.131 kb on - strand, within SMc03070 at 770.188 kb on - strand, within SMc03070 at 770.312 kb on - strand, within SMc03070 at 770.373 kb on + strand, within SMc03070 at 770.374 kb on - strand, within SMc03070 at 770.460 kb on + strand, within SMc03070 at 770.460 kb on + strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.692 kb on - strand at 770.841 kb on + strand at 770.841 kb on + strand at 770.842 kb on - strand at 770.869 kb on + strand at 770.870 kb on - strand at 770.948 kb on - strand at 771.067 kb on + strand, within SMc00761 at 771.067 kb on + strand, within SMc00761 at 771.229 kb on + strand, within SMc00761 at 771.252 kb on + strand, within SMc00761 at 771.290 kb on - strand, within SMc00761 at 771.290 kb on - strand, within SMc00761 at 771.340 kb on + strand, within SMc00761 at 771.341 kb on - strand, within SMc00761 at 771.341 kb on - strand, within SMc00761 at 771.479 kb on + strand, within SMc00761 at 771.481 kb on + strand, within SMc00761 at 771.481 kb on + strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 768,382 - -0.7 768,424 + -0.3 768,435 - -0.9 768,478 + -1.9 768,559 + +1.5 768,559 + -0.3 768,560 - +2.2 768,560 - +0.6 768,560 - +2.9 768,560 - +1.7 768,561 + +1.9 768,561 + +2.2 768,561 + +1.8 768,562 - +3.3 768,685 + SMc03069 0.20 +1.8 768,827 + SMc03069 0.40 +1.9 768,827 + SMc03069 0.40 +1.5 769,254 + +1.2 769,254 + +2.1 769,330 + -1.3 769,331 - +1.6 769,467 + SMc03070 0.14 -2.9 769,722 + SMc03070 0.32 -4.4 769,722 + SMc03070 0.32 -3.4 769,818 + SMc03070 0.38 -3.8 770,002 + SMc03070 0.51 -2.9 770,046 + SMc03070 0.54 -1.7 770,130 + SMc03070 0.59 -1.1 770,131 - SMc03070 0.59 -2.5 770,188 - SMc03070 0.63 -2.7 770,312 - SMc03070 0.72 -2.5 770,373 + SMc03070 0.76 -2.2 770,374 - SMc03070 0.76 -0.8 770,460 + SMc03070 0.82 -2.4 770,460 + SMc03070 0.82 -0.5 770,461 - SMc03070 0.82 -4.6 770,461 - SMc03070 0.82 -1.7 770,461 - SMc03070 0.82 -2.0 770,692 - -3.4 770,841 + -0.6 770,841 + +0.0 770,842 - +0.1 770,869 + -2.1 770,870 - -0.0 770,948 - +2.1 771,067 + SMc00761 0.11 +2.7 771,067 + SMc00761 0.11 +2.3 771,229 + SMc00761 0.24 +2.1 771,252 + SMc00761 0.25 +2.0 771,290 - SMc00761 0.28 +2.4 771,290 - SMc00761 0.28 +2.7 771,340 + SMc00761 0.32 +1.7 771,341 - SMc00761 0.32 +2.8 771,341 - SMc00761 0.32 +2.2 771,479 + SMc00761 0.43 +2.6 771,481 + SMc00761 0.43 +1.5 771,481 + SMc00761 0.43 +1.6 771,482 - SMc00761 0.43 +2.4 771,482 - SMc00761 0.43 +2.4 771,482 - SMc00761 0.43 +2.2 771,482 - SMc00761 0.43 +2.2
Or see this region's nucleotide sequence