Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03054 and SMc03055 overlap by 4 nucleotides SMc03055 and SMc03056 are separated by 4 nucleotides SMc03056 and SMc03071 are separated by 98 nucleotides
SMc03054: SMc03054 - flagellar biosynthesis protein FlhA, at 748,600 to 750,687
SMc03054
SMc03055: SMc03055 - flagellar biosynthesis protein FliR, at 750,684 to 751,436
SMc03055
SMc03056: SMc03056 - hypothetical protein, at 751,441 to 751,854
SMc03056
SMc03071: SMc03071 - hypothetical protein, at 751,953 to 752,507
SMc03071
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.788 kb on + strand, within SMc03054 at 749.848 kb on + strand, within SMc03054 at 749.848 kb on + strand, within SMc03054 at 749.848 kb on + strand, within SMc03054 at 749.848 kb on + strand, within SMc03054 at 749.848 kb on + strand, within SMc03054 at 749.849 kb on - strand, within SMc03054 at 749.849 kb on - strand, within SMc03054 at 749.849 kb on - strand, within SMc03054 at 750.050 kb on + strand, within SMc03054 at 750.051 kb on - strand, within SMc03054 at 750.112 kb on + strand, within SMc03054 at 750.113 kb on - strand, within SMc03054 at 750.113 kb on - strand, within SMc03054 at 750.154 kb on + strand, within SMc03054 at 750.180 kb on + strand, within SMc03054 at 750.197 kb on - strand, within SMc03054 at 750.519 kb on - strand at 750.560 kb on + strand at 750.560 kb on + strand at 750.561 kb on - strand at 750.583 kb on + strand at 750.583 kb on + strand at 750.583 kb on + strand at 750.584 kb on - strand at 750.584 kb on - strand at 750.858 kb on + strand, within SMc03055 at 750.859 kb on - strand, within SMc03055 at 750.859 kb on - strand, within SMc03055 at 750.888 kb on + strand, within SMc03055 at 750.894 kb on + strand, within SMc03055 at 750.894 kb on + strand, within SMc03055 at 750.895 kb on - strand, within SMc03055 at 750.895 kb on - strand, within SMc03055 at 750.895 kb on - strand, within SMc03055 at 750.949 kb on - strand, within SMc03055 at 750.949 kb on - strand, within SMc03055 at 750.951 kb on + strand, within SMc03055 at 750.951 kb on + strand, within SMc03055 at 750.952 kb on - strand, within SMc03055 at 750.952 kb on - strand, within SMc03055 at 751.037 kb on + strand, within SMc03055 at 751.257 kb on + strand, within SMc03055 at 751.312 kb on + strand, within SMc03055 at 751.312 kb on + strand, within SMc03055 at 751.313 kb on - strand, within SMc03055 at 751.313 kb on - strand, within SMc03055 at 751.320 kb on + strand, within SMc03055 at 751.321 kb on - strand, within SMc03055 at 751.321 kb on - strand, within SMc03055 at 751.338 kb on + strand, within SMc03055 at 751.339 kb on - strand, within SMc03055 at 751.621 kb on + strand, within SMc03056 at 751.621 kb on + strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.695 kb on + strand, within SMc03056 at 751.695 kb on + strand, within SMc03056 at 751.696 kb on - strand, within SMc03056 at 751.836 kb on + strand at 751.852 kb on + strand at 751.853 kb on - strand at 751.855 kb on + strand at 751.952 kb on + strand at 751.953 kb on - strand at 751.953 kb on - strand at 751.958 kb on + strand at 751.958 kb on + strand at 751.958 kb on + strand at 751.959 kb on - strand at 751.959 kb on - strand at 752.368 kb on + strand, within SMc03071
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 749,788 + SMc03054 0.57 -0.2 749,848 + SMc03054 0.60 +0.6 749,848 + SMc03054 0.60 +0.1 749,848 + SMc03054 0.60 -1.1 749,848 + SMc03054 0.60 +0.6 749,848 + SMc03054 0.60 +0.4 749,849 - SMc03054 0.60 +1.3 749,849 - SMc03054 0.60 +0.2 749,849 - SMc03054 0.60 -0.3 750,050 + SMc03054 0.69 -0.2 750,051 - SMc03054 0.69 -0.8 750,112 + SMc03054 0.72 +1.4 750,113 - SMc03054 0.72 -3.0 750,113 - SMc03054 0.72 +0.6 750,154 + SMc03054 0.74 +0.5 750,180 + SMc03054 0.76 +0.5 750,197 - SMc03054 0.76 -0.4 750,519 - +1.4 750,560 + -2.2 750,560 + +1.1 750,561 - +0.8 750,583 + +0.5 750,583 + +0.2 750,583 + +1.1 750,584 - -2.7 750,584 - +0.2 750,858 + SMc03055 0.23 -2.7 750,859 - SMc03055 0.23 -0.3 750,859 - SMc03055 0.23 -0.6 750,888 + SMc03055 0.27 -0.2 750,894 + SMc03055 0.28 -0.1 750,894 + SMc03055 0.28 +0.1 750,895 - SMc03055 0.28 -0.3 750,895 - SMc03055 0.28 -0.2 750,895 - SMc03055 0.28 +0.5 750,949 - SMc03055 0.35 +0.0 750,949 - SMc03055 0.35 +0.7 750,951 + SMc03055 0.35 +0.4 750,951 + SMc03055 0.35 +0.5 750,952 - SMc03055 0.36 -0.4 750,952 - SMc03055 0.36 -0.4 751,037 + SMc03055 0.47 -0.1 751,257 + SMc03055 0.76 +0.1 751,312 + SMc03055 0.83 +0.5 751,312 + SMc03055 0.83 +0.4 751,313 - SMc03055 0.84 +0.7 751,313 - SMc03055 0.84 -0.1 751,320 + SMc03055 0.84 -2.2 751,321 - SMc03055 0.85 -1.0 751,321 - SMc03055 0.85 -0.2 751,338 + SMc03055 0.87 +0.1 751,339 - SMc03055 0.87 -0.4 751,621 + SMc03056 0.43 -0.1 751,621 + SMc03056 0.43 +2.1 751,622 - SMc03056 0.44 +0.0 751,622 - SMc03056 0.44 +0.1 751,622 - SMc03056 0.44 +1.6 751,695 + SMc03056 0.61 +0.2 751,695 + SMc03056 0.61 -1.5 751,696 - SMc03056 0.62 +1.1 751,836 + -0.3 751,852 + -0.9 751,853 - +0.1 751,855 + +0.7 751,952 + -0.1 751,953 - -1.2 751,953 - -1.4 751,958 + +0.5 751,958 + +0.2 751,958 + -0.2 751,959 - +0.4 751,959 - +0.9 752,368 + SMc03071 0.75 +0.5
Or see this region's nucleotide sequence