Strain Fitness in Sinorhizobium meliloti 1021 around SMc02432

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02675 and SMc02432 are separated by 682 nucleotidesSMc02432 and SMc02433 are separated by 79 nucleotides SMc02675: SMc02675 - ribosomal RNA-16S, at 2,810,004 to 2,811,487 SMc02675 SMc02432: SMc02432 - hypothetical protein, at 2,812,170 to 2,814,110 SMc02432 SMc02433: SMc02433 - ATP-dependent protease, at 2,814,190 to 2,816,796 SMc02433 Position (kb) 2812 2813 2814 2815Strain fitness (log2 ratio) -2 -1 0 1 2at 2811.851 kb on + strandat 2811.853 kb on + strandat 2811.980 kb on + strandat 2811.980 kb on + strandat 2811.981 kb on - strandat 2812.094 kb on + strandat 2812.137 kb on + strandat 2812.137 kb on + strandat 2814.321 kb on - strandat 2814.509 kb on - strand, within SMc02433at 2814.620 kb on + strand, within SMc02433at 2814.620 kb on + strand, within SMc02433at 2814.632 kb on - strand, within SMc02433at 2814.730 kb on - strand, within SMc02433at 2814.730 kb on - strand, within SMc02433at 2814.833 kb on + strand, within SMc02433at 2814.834 kb on - strand, within SMc02433at 2814.834 kb on - strand, within SMc02433at 2814.834 kb on - strand, within SMc02433at 2814.881 kb on + strand, within SMc02433

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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2,811,851 + -0.1
2,811,853 + +0.5
2,811,980 + -0.4
2,811,980 + +2.1
2,811,981 - -2.2
2,812,094 + -0.3
2,812,137 + +0.9
2,812,137 + +0.1
2,814,321 - -0.3
2,814,509 - SMc02433 0.12 +0.4
2,814,620 + SMc02433 0.16 +0.6
2,814,620 + SMc02433 0.16 +0.6
2,814,632 - SMc02433 0.17 +0.1
2,814,730 - SMc02433 0.21 +0.7
2,814,730 - SMc02433 0.21 +1.4
2,814,833 + SMc02433 0.25 +0.5
2,814,834 - SMc02433 0.25 -0.5
2,814,834 - SMc02433 0.25 +0.8
2,814,834 - SMc02433 0.25 +0.6
2,814,881 + SMc02433 0.27 +0.9

Or see this region's nucleotide sequence