Strain Fitness in Sinorhizobium meliloti 1021 around SMc02369
Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Sisomicin 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,118,350 | - | SMc02368 | 0.78 | +1.0 | |
1,118,350 | - | SMc02368 | 0.78 | -0.5 | |
1,118,350 | - | SMc02368 | 0.78 | -0.3 | |
1,118,425 | - | SMc02368 | 0.80 | -2.1 | |
1,118,624 | - | SMc02368 | 0.87 | +0.2 | |
1,118,624 | - | SMc02368 | 0.87 | +0.9 | |
1,118,710 | + | SMc02368 | 0.90 | -0.1 | |
1,118,710 | + | SMc02368 | 0.90 | -1.2 | |
1,118,711 | - | SMc02368 | 0.90 | -0.6 | |
1,118,711 | - | SMc02368 | 0.90 | -0.5 | |
1,118,711 | - | SMc02368 | 0.90 | -0.4 | |
1,118,735 | + | -2.1 | |||
1,118,735 | + | -2.4 | |||
1,118,919 | + | +0.9 | |||
1,119,007 | - | -0.7 | |||
1,121,536 | - | -1.0 | |||
1,121,553 | - | +1.3 | |||
1,121,846 | + | +0.3 | |||
1,121,846 | + | +0.9 | |||
1,121,874 | - | -1.1 | |||
1,121,874 | - | +0.5 | |||
1,122,215 | + | SMc02370 | 0.19 | -0.6 | |
1,122,215 | + | SMc02370 | 0.19 | -0.7 | |
1,122,253 | + | SMc02370 | 0.21 | +0.7 | |
1,122,253 | + | SMc02370 | 0.21 | +1.3 | |
1,122,262 | + | SMc02370 | 0.21 | -0.0 | |
1,122,263 | - | SMc02370 | 0.21 | +1.1 |
Or see this region's nucleotide sequence