Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02262 and SMc02263 overlap by 4 nucleotides SMc02263 and SMc02264 are separated by 189 nucleotides SMc02264 and SMc02265 are separated by 93 nucleotides
SMc02262: SMc02262 - aminotransferase, at 626,634 to 627,824
SMc02262
SMc02263: SMc02263 - hypothetical protein, at 627,821 to 629,434
SMc02263
SMc02264: SMc02264 - hypothetical protein, at 629,624 to 630,016
SMc02264
SMc02265: SMc02265 - preprotein translocase subunit SecD/SecF, at 630,110 to 632,644
SMc02265
Position (kb) 627
628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2 at 626.829 kb on + strand, within SMc02262 at 626.871 kb on + strand, within SMc02262 at 627.005 kb on - strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.016 kb on - strand, within SMc02262 at 627.147 kb on - strand, within SMc02262 at 627.147 kb on - strand, within SMc02262 at 627.247 kb on + strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.250 kb on - strand, within SMc02262 at 627.469 kb on - strand, within SMc02262 at 627.594 kb on - strand, within SMc02262 at 627.913 kb on + strand at 627.914 kb on - strand at 627.914 kb on - strand at 627.914 kb on - strand at 628.061 kb on - strand, within SMc02263 at 628.670 kb on + strand, within SMc02263 at 628.991 kb on + strand, within SMc02263 at 629.055 kb on - strand, within SMc02263 at 629.055 kb on - strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.110 kb on - strand, within SMc02263 at 629.110 kb on - strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.307 kb on - strand at 629.307 kb on - strand at 629.755 kb on + strand, within SMc02264
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 626,829 + SMc02262 0.16 -0.8 626,871 + SMc02262 0.20 +2.3 627,005 - SMc02262 0.31 -0.3 627,015 + SMc02262 0.32 -0.1 627,015 + SMc02262 0.32 -0.5 627,015 + SMc02262 0.32 +1.0 627,016 - SMc02262 0.32 +0.7 627,147 - SMc02262 0.43 -0.8 627,147 - SMc02262 0.43 -0.1 627,247 + SMc02262 0.51 +0.2 627,248 - SMc02262 0.52 +0.2 627,248 - SMc02262 0.52 -0.4 627,248 - SMc02262 0.52 -0.3 627,248 - SMc02262 0.52 +0.7 627,248 - SMc02262 0.52 +0.9 627,249 + SMc02262 0.52 +0.0 627,249 + SMc02262 0.52 +0.1 627,249 + SMc02262 0.52 -0.2 627,249 + SMc02262 0.52 -0.5 627,249 + SMc02262 0.52 -1.9 627,249 + SMc02262 0.52 +0.5 627,250 - SMc02262 0.52 -1.4 627,469 - SMc02262 0.70 +0.1 627,594 - SMc02262 0.81 -0.4 627,913 + +1.1 627,914 - -0.3 627,914 - +0.2 627,914 - -0.1 628,061 - SMc02263 0.15 +0.6 628,670 + SMc02263 0.53 +0.4 628,991 + SMc02263 0.72 +0.6 629,055 - SMc02263 0.76 +0.3 629,055 - SMc02263 0.76 -1.4 629,109 + SMc02263 0.80 +0.5 629,109 + SMc02263 0.80 -1.3 629,109 + SMc02263 0.80 -0.5 629,110 - SMc02263 0.80 +1.1 629,110 - SMc02263 0.80 +0.9 629,231 + SMc02263 0.87 +0.3 629,231 + SMc02263 0.87 -0.7 629,231 + SMc02263 0.87 -1.3 629,231 + SMc02263 0.87 +2.0 629,232 - SMc02263 0.87 -0.2 629,232 - SMc02263 0.87 -0.5 629,232 - SMc02263 0.87 +1.0 629,232 - SMc02263 0.87 +0.8 629,307 - -1.0 629,307 - +0.5 629,755 + SMc02264 0.33 -1.0
Or see this region's nucleotide sequence