Strain Fitness in Sinorhizobium meliloti 1021 around SMc01804

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01802 and SMc01803 are separated by 154 nucleotidesSMc01803 and SMc01804 are separated by 2 nucleotidesSMc01804 and SMc01805 are separated by 218 nucleotidesSMc01805 and SMc01806 are separated by 168 nucleotides SMc01802: SMc01802 - agmatinase, at 1,349,168 to 1,350,124 SMc01802 SMc01803: SMc01803 - 30S ribosomal protein S9, at 1,350,279 to 1,350,746 SMc01803 SMc01804: SMc01804 - 50S ribosomal protein L13, at 1,350,749 to 1,351,213 SMc01804 SMc01805: SMc01805 - hypothetical protein, at 1,351,432 to 1,351,863 SMc01805 SMc01806: SMc01806 - enoyl-CoA hydratase, at 1,352,032 to 1,352,853 SMc01806 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1349.749 kb on - strand, within SMc01802at 1349.818 kb on - strand, within SMc01802at 1350.021 kb on + strand, within SMc01802at 1351.498 kb on + strand, within SMc01805at 1351.551 kb on + strand, within SMc01805at 1351.551 kb on + strand, within SMc01805at 1351.551 kb on + strand, within SMc01805at 1351.552 kb on - strand, within SMc01805at 1351.633 kb on - strand, within SMc01805at 1351.651 kb on - strand, within SMc01805at 1351.653 kb on - strand, within SMc01805at 1351.879 kb on + strandat 1351.879 kb on + strandat 1351.879 kb on + strandat 1351.879 kb on + strandat 1351.880 kb on - strandat 1351.901 kb on + strandat 1351.943 kb on + strandat 1351.943 kb on + strandat 1351.943 kb on + strandat 1351.944 kb on - strandat 1351.944 kb on - strandat 1351.944 kb on - strandat 1351.944 kb on - strandat 1352.113 kb on - strandat 1352.113 kb on - strandat 1352.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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1,349,749 - SMc01802 0.61 -1.6
1,349,818 - SMc01802 0.68 -0.7
1,350,021 + SMc01802 0.89 -1.8
1,351,498 + SMc01805 0.15 +0.3
1,351,551 + SMc01805 0.28 +0.0
1,351,551 + SMc01805 0.28 +0.3
1,351,551 + SMc01805 0.28 +0.1
1,351,552 - SMc01805 0.28 +0.3
1,351,633 - SMc01805 0.47 +2.0
1,351,651 - SMc01805 0.51 +2.4
1,351,653 - SMc01805 0.51 +0.4
1,351,879 + +0.2
1,351,879 + +0.9
1,351,879 + +1.2
1,351,879 + +0.7
1,351,880 - -3.0
1,351,901 + -2.4
1,351,943 + +1.1
1,351,943 + -0.1
1,351,943 + +0.1
1,351,944 - -0.1
1,351,944 - +0.7
1,351,944 - +0.2
1,351,944 - +0.8
1,352,113 - -0.4
1,352,113 - -1.2
1,352,113 - -0.1

Or see this region's nucleotide sequence