Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01457 and SMc01458 overlap by 4 nucleotides SMc01458 and SMc01459 are separated by 303 nucleotides
SMc01457: SMc01457 - transport transmembrane protein, at 2,300,845 to 2,303,979
SMc01457
SMc01458: SMc01458 - transporter, at 2,303,976 to 2,305,172
SMc01458
SMc01459: SMc01459 - hypothetical protein, at 2,305,476 to 2,306,297
SMc01459
Position (kb)
2303
2304
2305
2306 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2303.294 kb on + strand, within SMc01457 at 2303.295 kb on - strand, within SMc01457 at 2303.295 kb on - strand, within SMc01457 at 2303.295 kb on - strand, within SMc01457 at 2303.295 kb on - strand, within SMc01457 at 2304.185 kb on + strand, within SMc01458 at 2304.186 kb on - strand, within SMc01458 at 2304.523 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.532 kb on - strand, within SMc01458 at 2304.532 kb on - strand, within SMc01458 at 2304.533 kb on + strand, within SMc01458 at 2304.533 kb on + strand, within SMc01458 at 2304.534 kb on - strand, within SMc01458 at 2304.863 kb on + strand, within SMc01458 at 2305.303 kb on + strand at 2305.397 kb on + strand at 2305.398 kb on - strand at 2305.591 kb on + strand, within SMc01459 at 2306.105 kb on + strand, within SMc01459 at 2306.105 kb on + strand, within SMc01459 at 2306.106 kb on - strand, within SMc01459 at 2306.151 kb on + strand, within SMc01459
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 2,303,294 + SMc01457 0.78 -3.3 2,303,295 - SMc01457 0.78 -0.2 2,303,295 - SMc01457 0.78 -0.6 2,303,295 - SMc01457 0.78 -2.0 2,303,295 - SMc01457 0.78 -0.1 2,304,185 + SMc01458 0.17 -1.2 2,304,186 - SMc01458 0.18 -1.0 2,304,523 + SMc01458 0.46 -2.0 2,304,531 + SMc01458 0.46 -1.6 2,304,531 + SMc01458 0.46 -3.0 2,304,531 + SMc01458 0.46 -1.2 2,304,531 + SMc01458 0.46 -3.3 2,304,531 + SMc01458 0.46 -2.9 2,304,532 - SMc01458 0.46 -0.9 2,304,532 - SMc01458 0.46 -0.5 2,304,533 + SMc01458 0.47 -2.5 2,304,533 + SMc01458 0.47 +0.8 2,304,534 - SMc01458 0.47 -1.2 2,304,863 + SMc01458 0.74 -1.3 2,305,303 + -1.6 2,305,397 + -2.0 2,305,398 - -1.2 2,305,591 + SMc01459 0.14 -1.0 2,306,105 + SMc01459 0.77 +0.2 2,306,105 + SMc01459 0.77 +0.2 2,306,106 - SMc01459 0.77 -0.1 2,306,151 + SMc01459 0.82 -0.2
Or see this region's nucleotide sequence