Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01167 and SMc01151 are separated by 123 nucleotides SMc01151 and SMc01150 overlap by 4 nucleotides SMc01150 and SMc01149 are separated by 74 nucleotides SMc01149 and SMc01148 are separated by 15 nucleotides
SMc01167: SMc01167 - chromosomal replication initiation protein, at 399,330 to 400,853
SMc01167
SMc01151: SMc01151 - hypothetical protein, at 400,977 to 401,351
SMc01151
SMc01150: SMc01150 - hypothetical protein, at 401,348 to 402,619
SMc01150
SMc01149: SMc01149 - hypothetical protein, at 402,694 to 403,176
SMc01149
SMc01148: SMc01148 - hypothetical protein, at 403,192 to 404,058
SMc01148
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 400.851 kb on + strand at 400.873 kb on + strand at 400.873 kb on + strand at 400.939 kb on + strand at 400.983 kb on + strand at 401.082 kb on + strand, within SMc01151 at 401.082 kb on + strand, within SMc01151 at 401.082 kb on + strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.220 kb on + strand, within SMc01151 at 401.220 kb on + strand, within SMc01151 at 401.221 kb on - strand, within SMc01151 at 401.326 kb on - strand at 401.326 kb on - strand at 401.420 kb on + strand at 401.467 kb on + strand at 401.752 kb on - strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.942 kb on + strand, within SMc01150 at 402.228 kb on + strand, within SMc01150 at 402.306 kb on - strand, within SMc01150 at 402.435 kb on - strand, within SMc01150 at 402.440 kb on + strand, within SMc01150 at 402.440 kb on + strand, within SMc01150 at 402.441 kb on - strand, within SMc01150 at 402.441 kb on - strand, within SMc01150 at 402.443 kb on + strand, within SMc01150 at 402.470 kb on + strand, within SMc01150 at 402.551 kb on + strand at 402.551 kb on + strand at 402.552 kb on - strand at 402.554 kb on - strand at 402.914 kb on - strand, within SMc01149 at 402.918 kb on + strand, within SMc01149 at 402.918 kb on + strand, within SMc01149 at 402.919 kb on - strand, within SMc01149 at 402.932 kb on - strand, within SMc01149 at 402.932 kb on - strand, within SMc01149 at 403.057 kb on + strand, within SMc01149 at 403.060 kb on - strand, within SMc01149 at 403.060 kb on - strand, within SMc01149 at 403.241 kb on + strand at 403.591 kb on + strand, within SMc01148 at 403.591 kb on + strand, within SMc01148 at 403.591 kb on + strand, within SMc01148 at 403.592 kb on - strand, within SMc01148 at 403.592 kb on - strand, within SMc01148
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 400,851 + +1.7 400,873 + -0.7 400,873 + +0.7 400,939 + -1.1 400,983 + +0.1 401,082 + SMc01151 0.28 -0.1 401,082 + SMc01151 0.28 -0.6 401,082 + SMc01151 0.28 +0.3 401,083 - SMc01151 0.28 +0.7 401,083 - SMc01151 0.28 +0.0 401,083 - SMc01151 0.28 -1.7 401,220 + SMc01151 0.65 -0.0 401,220 + SMc01151 0.65 -0.5 401,221 - SMc01151 0.65 +0.9 401,326 - +0.7 401,326 - -2.4 401,420 + -0.9 401,467 + +0.0 401,752 - SMc01150 0.32 +0.2 401,921 + SMc01150 0.45 +0.1 401,921 + SMc01150 0.45 +0.3 401,921 + SMc01150 0.45 +0.4 401,921 + SMc01150 0.45 +0.2 401,921 + SMc01150 0.45 -0.3 401,921 + SMc01150 0.45 -0.3 401,921 + SMc01150 0.45 -0.8 401,922 - SMc01150 0.45 -0.4 401,922 - SMc01150 0.45 +0.5 401,922 - SMc01150 0.45 +1.7 401,922 - SMc01150 0.45 +1.4 401,942 + SMc01150 0.47 +0.5 402,228 + SMc01150 0.69 -0.3 402,306 - SMc01150 0.75 +0.9 402,435 - SMc01150 0.85 -1.8 402,440 + SMc01150 0.86 -0.2 402,440 + SMc01150 0.86 -0.0 402,441 - SMc01150 0.86 +0.5 402,441 - SMc01150 0.86 +1.5 402,443 + SMc01150 0.86 -2.8 402,470 + SMc01150 0.88 +0.5 402,551 + -0.2 402,551 + -0.4 402,552 - +0.3 402,554 - +0.2 402,914 - SMc01149 0.46 -0.6 402,918 + SMc01149 0.46 -0.7 402,918 + SMc01149 0.46 +0.0 402,919 - SMc01149 0.47 +2.4 402,932 - SMc01149 0.49 -0.3 402,932 - SMc01149 0.49 +0.2 403,057 + SMc01149 0.75 -0.5 403,060 - SMc01149 0.76 +1.2 403,060 - SMc01149 0.76 -0.4 403,241 + +0.9 403,591 + SMc01148 0.46 -0.4 403,591 + SMc01148 0.46 -1.1 403,591 + SMc01148 0.46 +0.4 403,592 - SMc01148 0.46 +0.6 403,592 - SMc01148 0.46 +0.2
Or see this region's nucleotide sequence