Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00884 and SMc00883 are separated by 90 nucleotides SMc00883 and SMc00882 overlap by 4 nucleotides SMc00882 and SMc00881 are separated by 14 nucleotides SMc00881 and SMc00880 overlap by 4 nucleotides
SMc00884: SMc00884 - dihydroxy-acid dehydratase, at 901,995 to 903,719
SMc00884
SMc00883: SMc00883 - L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) <small>(from data)</small>, at 903,810 to 904,694
SMc00883
SMc00882: SMc00882 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 904,691 to 905,329
SMc00882
SMc00881: SMc00881 - 2-dehydro-3-deoxygalactonokinase, at 905,344 to 906,264
SMc00881
SMc00880: SMc00880 - oxidoreductase, at 906,261 to 907,031
SMc00880
Position (kb) 904
905
906 Strain fitness (log2 ratio) -2
-1
0
1
2 at 903.811 kb on + strand at 903.811 kb on + strand at 903.812 kb on - strand at 903.994 kb on + strand, within SMc00883 at 904.022 kb on + strand, within SMc00883 at 904.024 kb on + strand, within SMc00883 at 904.024 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.168 kb on - strand, within SMc00883 at 904.265 kb on + strand, within SMc00883 at 904.265 kb on + strand, within SMc00883 at 904.266 kb on - strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.301 kb on - strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.707 kb on + strand at 904.720 kb on - strand at 904.824 kb on + strand, within SMc00882 at 904.824 kb on + strand, within SMc00882 at 904.825 kb on - strand, within SMc00882 at 904.825 kb on - strand, within SMc00882 at 904.825 kb on - strand at 905.122 kb on + strand, within SMc00882 at 905.234 kb on - strand, within SMc00882 at 905.271 kb on - strand at 905.271 kb on - strand at 905.271 kb on - strand at 905.342 kb on + strand at 905.445 kb on + strand, within SMc00881 at 905.451 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.656 kb on + strand, within SMc00881 at 905.656 kb on + strand, within SMc00881 at 905.657 kb on - strand, within SMc00881 at 905.694 kb on + strand, within SMc00881 at 905.695 kb on - strand, within SMc00881 at 906.018 kb on + strand, within SMc00881 at 906.020 kb on + strand, within SMc00881 at 906.245 kb on + strand at 906.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 903,811 + +0.1 903,811 + -0.0 903,812 - +1.3 903,994 + SMc00883 0.21 +1.1 904,022 + SMc00883 0.24 +1.7 904,024 + SMc00883 0.24 +0.1 904,024 + SMc00883 0.24 -2.5 904,167 + SMc00883 0.40 +0.2 904,167 + SMc00883 0.40 +0.1 904,167 + SMc00883 0.40 +1.1 904,167 + SMc00883 0.40 +0.4 904,168 - SMc00883 0.40 -1.2 904,265 + SMc00883 0.51 +0.2 904,265 + SMc00883 0.51 +0.3 904,266 - SMc00883 0.52 +0.2 904,300 + SMc00883 0.55 -0.0 904,300 + SMc00883 0.55 +0.2 904,300 + SMc00883 0.55 +0.1 904,301 - SMc00883 0.55 -0.9 904,586 + SMc00883 0.88 +0.0 904,586 + SMc00883 0.88 +0.6 904,587 - SMc00883 0.88 -0.5 904,587 - SMc00883 0.88 +0.3 904,587 - SMc00883 0.88 -0.5 904,587 - SMc00883 0.88 -0.1 904,707 + +0.3 904,720 - -1.1 904,824 + SMc00882 0.21 -1.0 904,824 + SMc00882 0.21 +0.8 904,825 - SMc00882 0.21 -1.4 904,825 - SMc00882 0.21 -2.0 904,825 - -2.0 905,122 + SMc00882 0.67 -0.8 905,234 - SMc00882 0.85 +2.4 905,271 - -0.5 905,271 - -0.4 905,271 - -1.5 905,342 + +0.3 905,445 + SMc00881 0.11 +0.1 905,451 - SMc00881 0.12 -0.7 905,486 - SMc00881 0.15 +0.6 905,486 - SMc00881 0.15 -1.2 905,486 - SMc00881 0.15 +0.6 905,486 - SMc00881 0.15 -1.5 905,656 + SMc00881 0.34 +0.5 905,656 + SMc00881 0.34 +0.3 905,657 - SMc00881 0.34 -1.7 905,694 + SMc00881 0.38 -0.4 905,695 - SMc00881 0.38 +1.0 906,018 + SMc00881 0.73 -0.2 906,020 + SMc00881 0.73 -0.1 906,245 + +0.3 906,249 - -1.2
Or see this region's nucleotide sequence