Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00787 and SMc00788 are separated by 10 nucleotides SMc00788 and SMc00789 are separated by 1 nucleotides SMc00789 and SMc00790 overlap by 4 nucleotides SMc00790 and SMc00791 are separated by 64 nucleotides
SMc00787: SMc00787 - peptide ABC transporter permease, at 809,186 to 810,190
SMc00787
SMc00788: SMc00788 - peptide ABC transporter permease, at 810,201 to 811,109
SMc00788
SMc00789: SMc00789 - peptide ABC transporter ATP-binding protein, at 811,111 to 811,965
SMc00789
SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789
SMc00790
SMc00791: SMc00791 - hypothetical protein, at 812,854 to 813,198
SMc00791
Position (kb) 811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 810.114 kb on + strand at 810.200 kb on + strand at 810.201 kb on - strand at 810.201 kb on - strand at 810.229 kb on + strand at 810.274 kb on - strand at 810.489 kb on + strand, within SMc00788 at 810.489 kb on + strand, within SMc00788 at 810.490 kb on - strand, within SMc00788 at 810.490 kb on - strand, within SMc00788 at 810.777 kb on + strand, within SMc00788 at 810.778 kb on - strand, within SMc00788 at 811.028 kb on + strand at 811.028 kb on + strand at 811.084 kb on + strand at 811.085 kb on - strand at 811.085 kb on - strand at 811.334 kb on + strand, within SMc00789 at 811.463 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.523 kb on + strand, within SMc00789 at 811.747 kb on - strand, within SMc00789 at 811.855 kb on + strand, within SMc00789 at 812.001 kb on + strand at 812.059 kb on + strand, within SMc00790 at 812.059 kb on + strand, within SMc00790 at 812.123 kb on + strand, within SMc00790 at 812.124 kb on - strand, within SMc00790 at 812.124 kb on - strand, within SMc00790 at 812.400 kb on + strand, within SMc00790 at 812.400 kb on + strand, within SMc00790 at 812.524 kb on + strand, within SMc00790 at 812.525 kb on - strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.633 kb on - strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.664 kb on + strand, within SMc00790 at 812.665 kb on - strand, within SMc00790 at 812.707 kb on - strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.709 kb on - strand at 812.709 kb on - strand at 812.797 kb on + strand at 812.797 kb on + strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.801 kb on + strand at 812.801 kb on + strand at 812.838 kb on + strand at 812.839 kb on - strand at 812.905 kb on + strand, within SMc00791 at 812.905 kb on + strand, within SMc00791
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 810,114 + -0.7 810,200 + -0.3 810,201 - -0.4 810,201 - -0.7 810,229 + -1.5 810,274 - -0.6 810,489 + SMc00788 0.32 -1.3 810,489 + SMc00788 0.32 -0.2 810,490 - SMc00788 0.32 +1.2 810,490 - SMc00788 0.32 -0.2 810,777 + SMc00788 0.63 -1.0 810,778 - SMc00788 0.63 -2.9 811,028 + -2.2 811,028 + -1.7 811,084 + -1.6 811,085 - -0.2 811,085 - +0.3 811,334 + SMc00789 0.26 +0.3 811,463 + SMc00789 0.41 -1.3 811,467 + SMc00789 0.42 -1.2 811,467 + SMc00789 0.42 +0.1 811,467 + SMc00789 0.42 -0.8 811,468 - SMc00789 0.42 -0.7 811,468 - SMc00789 0.42 -0.6 811,468 - SMc00789 0.42 -2.7 811,468 - SMc00789 0.42 -1.5 811,523 + SMc00789 0.48 -1.9 811,747 - SMc00789 0.74 +0.6 811,855 + SMc00789 0.87 -0.7 812,001 + -0.2 812,059 + SMc00790 0.12 -0.6 812,059 + SMc00790 0.12 -0.2 812,123 + SMc00790 0.19 -0.1 812,124 - SMc00790 0.20 -1.2 812,124 - SMc00790 0.20 -2.6 812,400 + SMc00790 0.53 +0.3 812,400 + SMc00790 0.53 -0.4 812,524 + SMc00790 0.68 -0.6 812,525 - SMc00790 0.68 -1.8 812,580 + SMc00790 0.75 -2.2 812,580 + SMc00790 0.75 -0.2 812,580 + SMc00790 0.75 -1.4 812,581 - SMc00790 0.75 -0.7 812,581 - SMc00790 0.75 -1.4 812,581 - SMc00790 0.75 +0.0 812,581 - SMc00790 0.75 -0.2 812,581 - SMc00790 0.75 -0.4 812,581 - SMc00790 0.75 +1.8 812,616 + SMc00790 0.79 +0.2 812,616 + SMc00790 0.79 -0.1 812,616 + SMc00790 0.79 -0.2 812,632 + SMc00790 0.81 +1.4 812,632 + SMc00790 0.81 -0.5 812,633 - SMc00790 0.81 -0.0 812,643 + SMc00790 0.82 -1.1 812,643 + SMc00790 0.82 -1.7 812,644 - SMc00790 0.82 -0.8 812,644 - SMc00790 0.82 -1.5 812,644 - SMc00790 0.82 -1.7 812,664 + SMc00790 0.85 -0.8 812,665 - SMc00790 0.85 -0.3 812,707 - -0.2 812,708 + -1.3 812,708 + -1.9 812,708 + -0.7 812,709 - -0.2 812,709 - +0.8 812,797 + -0.4 812,797 + -0.6 812,798 - +0.6 812,798 - -0.4 812,798 - -0.5 812,798 - +0.0 812,798 - -0.1 812,801 + -0.4 812,801 + -0.8 812,838 + +1.7 812,839 - -0.6 812,905 + SMc00791 0.15 -0.9 812,905 + SMc00791 0.15 -0.3
Or see this region's nucleotide sequence