Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00787 and SMc00788 are separated by 10 nucleotides SMc00788 and SMc00789 are separated by 1 nucleotides SMc00789 and SMc00790 overlap by 4 nucleotides
SMc00787: SMc00787 - peptide ABC transporter permease, at 809,186 to 810,190
SMc00787
SMc00788: SMc00788 - peptide ABC transporter permease, at 810,201 to 811,109
SMc00788
SMc00789: SMc00789 - peptide ABC transporter ATP-binding protein, at 811,111 to 811,965
SMc00789
SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789
SMc00790
Position (kb) 810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.381 kb on + strand, within SMc00787 at 809.381 kb on + strand, within SMc00787 at 809.390 kb on + strand, within SMc00787 at 809.745 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.883 kb on - strand, within SMc00787 at 809.883 kb on - strand, within SMc00787 at 810.083 kb on + strand, within SMc00787 at 810.083 kb on + strand, within SMc00787 at 810.093 kb on + strand at 810.093 kb on + strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.114 kb on + strand at 810.200 kb on + strand at 810.201 kb on - strand at 810.201 kb on - strand at 810.229 kb on + strand at 810.274 kb on - strand at 810.489 kb on + strand, within SMc00788 at 810.489 kb on + strand, within SMc00788 at 810.490 kb on - strand, within SMc00788 at 810.490 kb on - strand, within SMc00788 at 810.777 kb on + strand, within SMc00788 at 810.778 kb on - strand, within SMc00788 at 811.028 kb on + strand at 811.028 kb on + strand at 811.084 kb on + strand at 811.085 kb on - strand at 811.085 kb on - strand at 811.334 kb on + strand, within SMc00789 at 811.463 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.523 kb on + strand, within SMc00789 at 811.747 kb on - strand, within SMc00789 at 811.855 kb on + strand, within SMc00789 at 812.001 kb on + strand at 812.059 kb on + strand, within SMc00790 at 812.059 kb on + strand, within SMc00790
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 809,381 + SMc00787 0.19 -0.5 809,381 + SMc00787 0.19 -0.6 809,390 + SMc00787 0.20 +0.4 809,745 + SMc00787 0.56 -0.4 809,882 + SMc00787 0.69 -0.9 809,882 + SMc00787 0.69 +0.4 809,882 + SMc00787 0.69 +0.1 809,882 + SMc00787 0.69 +2.4 809,883 - SMc00787 0.69 -2.0 809,883 - SMc00787 0.69 -0.7 810,083 + SMc00787 0.89 -0.5 810,083 + SMc00787 0.89 -0.6 810,093 + +0.8 810,093 + +0.0 810,094 - -0.7 810,094 - -0.6 810,094 - +1.0 810,094 - -0.2 810,114 + -0.7 810,200 + -0.3 810,201 - -0.4 810,201 - -0.7 810,229 + -1.5 810,274 - -0.6 810,489 + SMc00788 0.32 -1.3 810,489 + SMc00788 0.32 -0.2 810,490 - SMc00788 0.32 +1.2 810,490 - SMc00788 0.32 -0.2 810,777 + SMc00788 0.63 -1.0 810,778 - SMc00788 0.63 -2.9 811,028 + -2.2 811,028 + -1.7 811,084 + -1.6 811,085 - -0.2 811,085 - +0.3 811,334 + SMc00789 0.26 +0.3 811,463 + SMc00789 0.41 -1.3 811,467 + SMc00789 0.42 -1.2 811,467 + SMc00789 0.42 +0.1 811,467 + SMc00789 0.42 -0.8 811,468 - SMc00789 0.42 -0.7 811,468 - SMc00789 0.42 -0.6 811,468 - SMc00789 0.42 -2.7 811,468 - SMc00789 0.42 -1.5 811,523 + SMc00789 0.48 -1.9 811,747 - SMc00789 0.74 +0.6 811,855 + SMc00789 0.87 -0.7 812,001 + -0.2 812,059 + SMc00790 0.12 -0.6 812,059 + SMc00790 0.12 -0.2
Or see this region's nucleotide sequence