Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00776 and SMc00777 are separated by 232 nucleotides SMc00777 and SMc00841 are separated by 162 nucleotides SMc00841 and SMc00778 are separated by 215 nucleotides
SMc00776: SMc00776 - sensor histidine kinase, at 793,692 to 797,096
SMc00776
SMc00777: SMc00777 - hypothetical protein, at 797,329 to 797,775
SMc00777
SMc00841: SMc00841 - tRNA-His, at 797,938 to 798,014
SMc00841
SMc00778: SMc00778 - oxidoreductase, at 798,230 to 798,997
SMc00778
Position (kb) 797
798 Strain fitness (log2 ratio) -2
-1
0
1
2 at 797.097 kb on - strand at 797.107 kb on - strand at 797.223 kb on - strand at 797.269 kb on + strand at 797.269 kb on + strand at 797.270 kb on - strand at 797.270 kb on - strand at 798.057 kb on - strand at 798.080 kb on + strand at 798.132 kb on + strand at 798.132 kb on + strand at 798.132 kb on + strand at 798.133 kb on - strand at 798.133 kb on - strand at 798.133 kb on - strand at 798.133 kb on - strand at 798.210 kb on + strand at 798.210 kb on + strand at 798.263 kb on - strand at 798.263 kb on - strand at 798.441 kb on + strand, within SMc00778 at 798.442 kb on - strand, within SMc00778 at 798.695 kb on + strand, within SMc00778 at 798.696 kb on - strand, within SMc00778 at 798.722 kb on - strand, within SMc00778 at 798.722 kb on - strand, within SMc00778 at 798.722 kb on - strand, within SMc00778
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 797,097 - -1.0 797,107 - +0.1 797,223 - -0.2 797,269 + +0.0 797,269 + -2.2 797,270 - -0.4 797,270 - -0.9 798,057 - +0.8 798,080 + -0.2 798,132 + -2.0 798,132 + -0.1 798,132 + +0.0 798,133 - -0.8 798,133 - +1.9 798,133 - -0.2 798,133 - -0.2 798,210 + -0.3 798,210 + -0.3 798,263 - +0.4 798,263 - +0.1 798,441 + SMc00778 0.27 -1.7 798,442 - SMc00778 0.28 +0.2 798,695 + SMc00778 0.61 +0.1 798,696 - SMc00778 0.61 -0.8 798,722 - SMc00778 0.64 -0.1 798,722 - SMc00778 0.64 +0.0 798,722 - SMc00778 0.64 -0.8
Or see this region's nucleotide sequence