Strain Fitness in Sinorhizobium meliloti 1021 around SMc00691

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00694 and SMc00693 overlap by 4 nucleotidesSMc00693 and SMc00692 are separated by 287 nucleotidesSMc00692 and SMc00691 overlap by 4 nucleotidesSMc00691 and SMc00690 are separated by 63 nucleotides SMc00694: SMc00694 - hypothetical protein, at 2,885,341 to 2,885,643 SMc00694 SMc00693: SMc00693 - hypothetical protein, at 2,885,640 to 2,885,915 SMc00693 SMc00692: SMc00692 - signal peptide protein, at 2,886,203 to 2,886,352 SMc00692 SMc00691: SMc00691 - site-specific tyrosine recombinase XerD, at 2,886,349 to 2,887,284 SMc00691 SMc00690: SMc00690 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 2,887,348 to 2,888,301 SMc00690 Position (kb) 2886 2887 2888Strain fitness (log2 ratio) -2 -1 0 1 2at 2885.366 kb on + strandat 2885.397 kb on + strand, within SMc00694at 2885.397 kb on + strand, within SMc00694at 2885.397 kb on + strand, within SMc00694at 2885.401 kb on + strand, within SMc00694at 2885.402 kb on - strand, within SMc00694at 2885.402 kb on - strand, within SMc00694at 2885.423 kb on + strand, within SMc00694at 2885.424 kb on - strand, within SMc00694at 2885.458 kb on - strand, within SMc00694at 2885.458 kb on - strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.568 kb on + strand, within SMc00694at 2885.600 kb on - strand, within SMc00694at 2885.600 kb on - strand, within SMc00694at 2885.929 kb on - strandat 2885.934 kb on + strandat 2886.026 kb on + strandat 2886.090 kb on + strandat 2886.090 kb on + strandat 2886.116 kb on + strandat 2886.357 kb on + strandat 2886.357 kb on + strandat 2886.358 kb on - strandat 2886.370 kb on + strandat 2886.370 kb on + strandat 2886.370 kb on + strandat 2886.371 kb on - strandat 2886.436 kb on + strandat 2886.523 kb on + strand, within SMc00691at 2886.523 kb on + strand, within SMc00691at 2886.523 kb on + strand, within SMc00691at 2886.523 kb on + strand, within SMc00691at 2886.599 kb on - strand, within SMc00691at 2887.158 kb on - strand, within SMc00691at 2887.202 kb on - strandat 2887.203 kb on + strandat 2887.282 kb on + strandat 2887.282 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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2,885,366 + +1.0
2,885,397 + SMc00694 0.18 +1.0
2,885,397 + SMc00694 0.18 +0.5
2,885,397 + SMc00694 0.18 -0.7
2,885,401 + SMc00694 0.20 +2.4
2,885,402 - SMc00694 0.20 +0.1
2,885,402 - SMc00694 0.20 -1.7
2,885,423 + SMc00694 0.27 -0.3
2,885,424 - SMc00694 0.27 +0.2
2,885,458 - SMc00694 0.39 +0.5
2,885,458 - SMc00694 0.39 +1.1
2,885,546 + SMc00694 0.68 -0.1
2,885,546 + SMc00694 0.68 -0.1
2,885,546 + SMc00694 0.68 +0.2
2,885,547 - SMc00694 0.68 -0.1
2,885,547 - SMc00694 0.68 +1.1
2,885,547 - SMc00694 0.68 +0.2
2,885,568 + SMc00694 0.75 +0.2
2,885,600 - SMc00694 0.85 -2.0
2,885,600 - SMc00694 0.85 -0.1
2,885,929 - +1.1
2,885,934 + +0.3
2,886,026 + -0.9
2,886,090 + +0.7
2,886,090 + -1.0
2,886,116 + -1.0
2,886,357 + +0.7
2,886,357 + -0.6
2,886,358 - -1.8
2,886,370 + +0.0
2,886,370 + +1.4
2,886,370 + +1.0
2,886,371 - -0.3
2,886,436 + -1.8
2,886,523 + SMc00691 0.19 -0.6
2,886,523 + SMc00691 0.19 -0.0
2,886,523 + SMc00691 0.19 -2.3
2,886,523 + SMc00691 0.19 -0.5
2,886,599 - SMc00691 0.27 -2.6
2,887,158 - SMc00691 0.86 -0.7
2,887,202 - +1.3
2,887,203 + -2.5
2,887,282 + -1.5
2,887,282 + +0.4

Or see this region's nucleotide sequence