Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00619 and SMc00620 are separated by 136 nucleotides SMc00620 and SMc00621 are separated by 70 nucleotides
SMc00619: SMc00619 - hypothetical protein, at 1,292,337 to 1,293,860
SMc00619
SMc00620: SMc00620 - signal peptide protein, at 1,293,997 to 1,295,355
SMc00620
SMc00621: SMc00621 - adenylate cyclase 2 protein, at 1,295,426 to 1,296,517
SMc00621
Position (kb)
1293
1294
1295
1296 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1293.538 kb on - strand, within SMc00619 at 1293.538 kb on - strand, within SMc00619 at 1294.110 kb on + strand at 1294.163 kb on + strand, within SMc00620 at 1294.163 kb on + strand, within SMc00620 at 1294.164 kb on - strand, within SMc00620 at 1294.454 kb on + strand, within SMc00620 at 1294.455 kb on - strand, within SMc00620 at 1294.455 kb on - strand, within SMc00620 at 1294.581 kb on - strand, within SMc00620 at 1294.581 kb on - strand, within SMc00620 at 1294.776 kb on - strand, within SMc00620 at 1294.857 kb on - strand, within SMc00620 at 1295.356 kb on - strand at 1295.427 kb on + strand at 1295.697 kb on + strand, within SMc00621 at 1295.910 kb on + strand, within SMc00621 at 1295.910 kb on + strand, within SMc00621 at 1295.910 kb on + strand, within SMc00621 at 1295.910 kb on + strand, within SMc00621 at 1295.931 kb on + strand, within SMc00621 at 1295.976 kb on + strand, within SMc00621 at 1295.976 kb on + strand, within SMc00621 at 1295.976 kb on + strand, within SMc00621 at 1295.977 kb on - strand, within SMc00621 at 1296.168 kb on + strand, within SMc00621 at 1296.169 kb on - strand, within SMc00621 at 1296.275 kb on + strand, within SMc00621 at 1296.282 kb on + strand, within SMc00621
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 1,293,538 - SMc00619 0.79 -2.5 1,293,538 - SMc00619 0.79 -3.3 1,294,110 + +0.3 1,294,163 + SMc00620 0.12 -0.6 1,294,163 + SMc00620 0.12 +0.1 1,294,164 - SMc00620 0.12 -0.4 1,294,454 + SMc00620 0.34 +1.4 1,294,455 - SMc00620 0.34 +0.9 1,294,455 - SMc00620 0.34 -0.3 1,294,581 - SMc00620 0.43 +0.1 1,294,581 - SMc00620 0.43 -0.7 1,294,776 - SMc00620 0.57 +0.5 1,294,857 - SMc00620 0.63 -0.6 1,295,356 - -3.1 1,295,427 + -0.2 1,295,697 + SMc00621 0.25 -1.0 1,295,910 + SMc00621 0.44 +0.9 1,295,910 + SMc00621 0.44 +0.4 1,295,910 + SMc00621 0.44 +0.3 1,295,910 + SMc00621 0.44 +1.7 1,295,931 + SMc00621 0.46 -0.4 1,295,976 + SMc00621 0.50 -0.6 1,295,976 + SMc00621 0.50 -0.2 1,295,976 + SMc00621 0.50 +0.3 1,295,977 - SMc00621 0.50 +0.2 1,296,168 + SMc00621 0.68 -0.5 1,296,169 - SMc00621 0.68 +0.2 1,296,275 + SMc00621 0.78 -0.2 1,296,282 + SMc00621 0.78 -0.2
Or see this region's nucleotide sequence