Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00415 and SMc00416 are separated by 277 nucleotides SMc00416 and SMc00418 overlap by 11 nucleotides SMc00418 and SMc00419 are separated by 204 nucleotides
SMc00415: SMc00415 - DNA polymerase III subunit beta, at 364,184 to 365,302
SMc00415
SMc00416: SMc00416 - hypothetical protein, at 365,580 to 366,509
SMc00416
SMc00418: SMc00418 - hypothetical protein, at 366,499 to 366,867
SMc00418
SMc00419: SMc00419 - glutathione synthetase, at 367,072 to 368,019
SMc00419
Position (kb) 365
366
367 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 365.507 kb on - strand at 365.507 kb on - strand at 365.645 kb on + strand at 365.645 kb on + strand at 365.646 kb on - strand at 365.683 kb on - strand, within SMc00416 at 365.683 kb on - strand, within SMc00416 at 365.683 kb on - strand, within SMc00416 at 365.735 kb on - strand, within SMc00416 at 365.805 kb on + strand, within SMc00416 at 365.995 kb on + strand, within SMc00416 at 365.995 kb on + strand, within SMc00416 at 365.996 kb on - strand, within SMc00416 at 366.289 kb on - strand, within SMc00416 at 366.468 kb on + strand at 366.683 kb on + strand, within SMc00418 at 366.808 kb on + strand, within SMc00418 at 366.808 kb on + strand, within SMc00418 at 366.808 kb on + strand, within SMc00418 at 366.808 kb on + strand, within SMc00418 at 366.809 kb on - strand, within SMc00418 at 366.919 kb on + strand at 366.920 kb on - strand at 367.000 kb on + strand at 367.002 kb on + strand at 367.037 kb on + strand at 367.038 kb on - strand at 367.363 kb on + strand, within SMc00419 at 367.364 kb on - strand, within SMc00419 at 367.364 kb on - strand, within SMc00419 at 367.364 kb on - strand, within SMc00419 at 367.364 kb on - strand, within SMc00419 at 367.366 kb on - strand, within SMc00419
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 365,507 - -1.9 365,507 - -2.0 365,645 + -1.2 365,645 + -2.3 365,646 - -3.2 365,683 - SMc00416 0.11 -4.1 365,683 - SMc00416 0.11 -1.8 365,683 - SMc00416 0.11 -3.5 365,735 - SMc00416 0.17 -2.5 365,805 + SMc00416 0.24 -2.4 365,995 + SMc00416 0.45 -3.6 365,995 + SMc00416 0.45 -3.2 365,996 - SMc00416 0.45 -3.8 366,289 - SMc00416 0.76 -2.7 366,468 + -2.3 366,683 + SMc00418 0.50 +0.1 366,808 + SMc00418 0.84 +0.4 366,808 + SMc00418 0.84 -0.1 366,808 + SMc00418 0.84 +1.6 366,808 + SMc00418 0.84 +0.3 366,809 - SMc00418 0.84 -0.4 366,919 + -0.5 366,920 - +0.7 367,000 + +4.2 367,002 + -0.0 367,037 + -0.5 367,038 - +1.3 367,363 + SMc00419 0.31 +0.0 367,364 - SMc00419 0.31 -0.1 367,364 - SMc00419 0.31 -0.3 367,364 - SMc00419 0.31 -1.4 367,364 - SMc00419 0.31 -3.0 367,366 - SMc00419 0.31 -1.7
Or see this region's nucleotide sequence