Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00358 and SMc00359 are separated by 274 nucleotides SMc00359 and SMc00360 are separated by 231 nucleotides
SMc00358: SMc00358 - cyclopropane-fatty-acyl-phospholipid synthase, at 313,033 to 314,274
SMc00358
SMc00359: SMc00359 - hypothetical protein, at 314,549 to 315,532
SMc00359
SMc00360: SMc00360 - hypothetical protein, at 315,764 to 316,384
SMc00360
Position (kb) 314
315
316 Strain fitness (log2 ratio) -1
0
1
2 at 313.601 kb on - strand, within SMc00358 at 313.601 kb on - strand, within SMc00358 at 313.601 kb on - strand, within SMc00358 at 313.799 kb on - strand, within SMc00358 at 313.872 kb on + strand, within SMc00358 at 313.872 kb on + strand, within SMc00358 at 313.873 kb on - strand, within SMc00358 at 313.912 kb on + strand, within SMc00358 at 313.913 kb on - strand, within SMc00358 at 313.914 kb on + strand, within SMc00358 at 313.915 kb on - strand, within SMc00358 at 314.014 kb on + strand, within SMc00358 at 314.014 kb on + strand, within SMc00358 at 314.080 kb on + strand, within SMc00358 at 314.113 kb on + strand, within SMc00358 at 314.114 kb on - strand, within SMc00358 at 314.114 kb on - strand, within SMc00358 at 314.166 kb on + strand at 314.166 kb on + strand at 314.236 kb on + strand at 314.236 kb on + strand at 314.237 kb on - strand at 314.237 kb on - strand at 314.237 kb on - strand at 314.273 kb on - strand at 314.327 kb on + strand at 314.327 kb on + strand at 314.328 kb on - strand at 314.446 kb on + strand at 314.447 kb on - strand at 314.448 kb on + strand at 314.449 kb on - strand at 314.522 kb on + strand at 314.529 kb on - strand at 314.654 kb on + strand, within SMc00359 at 314.654 kb on + strand, within SMc00359 at 314.655 kb on - strand, within SMc00359 at 314.688 kb on - strand, within SMc00359 at 314.798 kb on - strand, within SMc00359 at 315.029 kb on - strand, within SMc00359 at 315.081 kb on + strand, within SMc00359 at 315.082 kb on - strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.090 kb on - strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.176 kb on - strand, within SMc00359 at 315.176 kb on - strand, within SMc00359 at 315.350 kb on + strand, within SMc00359 at 315.440 kb on + strand at 315.530 kb on + strand at 315.530 kb on + strand at 315.530 kb on + strand at 315.665 kb on - strand at 315.800 kb on - strand at 316.093 kb on + strand, within SMc00360 at 316.094 kb on - strand, within SMc00360 at 316.193 kb on - strand, within SMc00360 at 316.225 kb on - strand, within SMc00360 at 316.385 kb on - strand at 316.414 kb on + strand at 316.459 kb on - strand at 316.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 313,601 - SMc00358 0.46 -0.3 313,601 - SMc00358 0.46 -0.5 313,601 - SMc00358 0.46 -0.9 313,799 - SMc00358 0.62 -0.9 313,872 + SMc00358 0.68 -0.1 313,872 + SMc00358 0.68 -0.2 313,873 - SMc00358 0.68 -0.2 313,912 + SMc00358 0.71 -1.7 313,913 - SMc00358 0.71 +0.3 313,914 + SMc00358 0.71 -0.3 313,915 - SMc00358 0.71 -0.7 314,014 + SMc00358 0.79 +1.7 314,014 + SMc00358 0.79 -1.4 314,080 + SMc00358 0.84 -1.0 314,113 + SMc00358 0.87 +0.8 314,114 - SMc00358 0.87 -1.1 314,114 - SMc00358 0.87 -0.1 314,166 + -0.7 314,166 + -1.4 314,236 + -0.1 314,236 + -1.2 314,237 - -0.1 314,237 - -0.1 314,237 - -1.1 314,273 - -0.3 314,327 + +0.9 314,327 + -0.3 314,328 - -0.6 314,446 + +0.2 314,447 - +1.1 314,448 + +0.6 314,449 - -1.2 314,522 + -0.7 314,529 - -0.6 314,654 + SMc00359 0.11 -0.6 314,654 + SMc00359 0.11 +0.9 314,655 - SMc00359 0.11 -0.3 314,688 - SMc00359 0.14 -0.1 314,798 - SMc00359 0.25 +0.2 315,029 - SMc00359 0.49 -0.2 315,081 + SMc00359 0.54 +0.5 315,082 - SMc00359 0.54 +0.6 315,089 + SMc00359 0.55 +0.8 315,089 + SMc00359 0.55 +1.9 315,089 + SMc00359 0.55 +2.3 315,089 + SMc00359 0.55 -0.2 315,089 + SMc00359 0.55 -0.4 315,089 + SMc00359 0.55 -0.1 315,089 + SMc00359 0.55 -1.4 315,089 + SMc00359 0.55 -1.5 315,090 - SMc00359 0.55 -0.5 315,175 + SMc00359 0.64 -0.9 315,175 + SMc00359 0.64 +1.1 315,175 + SMc00359 0.64 -0.5 315,175 + SMc00359 0.64 +0.2 315,176 - SMc00359 0.64 -0.3 315,176 - SMc00359 0.64 -0.5 315,350 + SMc00359 0.81 +0.9 315,440 + +0.8 315,530 + +0.5 315,530 + -0.4 315,530 + -1.4 315,665 - +0.2 315,800 - -0.7 316,093 + SMc00360 0.53 +0.3 316,094 - SMc00360 0.53 +0.8 316,193 - SMc00360 0.69 +0.0 316,225 - SMc00360 0.74 +0.5 316,385 - -0.2 316,414 + +0.3 316,459 - +0.6 316,505 + -1.1
Or see this region's nucleotide sequence