Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00355 and SMc00356 overlap by 4 nucleotides SMc00356 and SMc00357 are separated by 161 nucleotides SMc00357 and SMc00358 are separated by 212 nucleotides
SMc00355: SMc00355 - hypothetical protein, at 309,988 to 311,040
SMc00355
SMc00356: SMc00356 - lysyl-tRNA synthetase, at 311,037 to 312,089
SMc00356
SMc00357: SMc00357 - elongation factor P, at 312,251 to 312,820
SMc00357
SMc00358: SMc00358 - cyclopropane-fatty-acyl-phospholipid synthase, at 313,033 to 314,274
SMc00358
Position (kb) 311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 310.041 kb on - strand at 310.118 kb on + strand, within SMc00355 at 310.238 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.634 kb on + strand, within SMc00355 at 311.200 kb on + strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.459 kb on + strand, within SMc00356 at 311.459 kb on + strand, within SMc00356 at 311.635 kb on + strand, within SMc00356 at 311.635 kb on + strand, within SMc00356 at 311.786 kb on - strand, within SMc00356 at 311.866 kb on + strand, within SMc00356 at 312.140 kb on + strand at 312.140 kb on + strand at 312.140 kb on + strand at 312.229 kb on - strand at 312.237 kb on + strand at 312.893 kb on - strand at 312.991 kb on - strand at 312.991 kb on - strand at 312.991 kb on - strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.051 kb on - strand at 313.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 310,041 - +3.2 310,118 + SMc00355 0.12 -0.9 310,238 + SMc00355 0.24 -0.2 310,421 + SMc00355 0.41 +0.9 310,421 + SMc00355 0.41 -2.1 310,421 + SMc00355 0.41 -1.5 310,421 + SMc00355 0.41 -1.1 310,422 - SMc00355 0.41 -2.8 310,422 - SMc00355 0.41 -1.4 310,422 - SMc00355 0.41 -2.1 310,634 + SMc00355 0.61 -1.1 311,200 + SMc00356 0.15 -1.6 311,303 - SMc00356 0.25 -2.3 311,303 - SMc00356 0.25 -0.7 311,303 - SMc00356 0.25 -0.3 311,459 + SMc00356 0.40 -1.2 311,459 + SMc00356 0.40 -1.1 311,635 + SMc00356 0.57 -1.2 311,635 + SMc00356 0.57 +0.2 311,786 - SMc00356 0.71 -0.8 311,866 + SMc00356 0.79 -1.0 312,140 + -0.8 312,140 + -1.7 312,140 + -1.4 312,229 - -3.4 312,237 + +2.4 312,893 - +0.0 312,991 - +0.6 312,991 - +0.7 312,991 - +2.5 313,050 + -0.1 313,050 + +0.1 313,050 + -0.3 313,050 + -0.7 313,051 - +0.9 313,083 + +0.2
Or see this region's nucleotide sequence