Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2245 and SMa2249 are separated by 789 nucleotides SMa2249 and SMa2251 overlap by 4 nucleotides
SMa2245: SMa2245 - hypothetical protein, at 1,257,344 to 1,259,881
SMa2245
SMa2249: SMa2249 - hypothetical protein, at 1,260,671 to 1,261,777
SMa2249
SMa2251: SMa2251 - hypothetical protein, at 1,261,774 to 1,262,337
SMa2251
Position (kb)
1260
1261
1262 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1259.680 kb on + strand at 1259.733 kb on + strand at 1259.753 kb on + strand at 1259.753 kb on + strand at 1259.789 kb on - strand at 1259.877 kb on - strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.883 kb on - strand at 1259.883 kb on - strand at 1259.883 kb on - strand at 1259.883 kb on - strand at 1259.883 kb on - strand at 1259.885 kb on - strand at 1259.886 kb on + strand at 1259.955 kb on - strand at 1259.994 kb on + strand at 1259.995 kb on - strand at 1260.055 kb on - strand at 1260.207 kb on + strand at 1260.207 kb on + strand at 1260.233 kb on - strand at 1260.362 kb on + strand at 1260.362 kb on + strand at 1260.507 kb on + strand at 1260.508 kb on - strand at 1260.508 kb on - strand at 1260.508 kb on - strand at 1260.532 kb on + strand at 1260.538 kb on + strand at 1260.539 kb on - strand at 1260.539 kb on - strand at 1261.029 kb on + strand, within SMa2249 at 1261.073 kb on + strand, within SMa2249 at 1261.124 kb on + strand, within SMa2249 at 1261.238 kb on - strand, within SMa2249 at 1261.238 kb on - strand, within SMa2249 at 1261.414 kb on + strand, within SMa2249 at 1261.547 kb on + strand, within SMa2249 at 1261.548 kb on - strand, within SMa2249 at 1261.548 kb on - strand, within SMa2249 at 1261.548 kb on - strand, within SMa2249 at 1261.638 kb on + strand, within SMa2249 at 1261.639 kb on - strand, within SMa2249 at 1261.924 kb on + strand, within SMa2251 at 1261.925 kb on - strand, within SMa2251 at 1262.000 kb on + strand, within SMa2251 at 1262.021 kb on - strand, within SMa2251 at 1262.097 kb on + strand, within SMa2251 at 1262.130 kb on + strand, within SMa2251 at 1262.130 kb on + strand, within SMa2251 at 1262.130 kb on + strand, within SMa2251 at 1262.174 kb on + strand, within SMa2251 at 1262.252 kb on - strand, within SMa2251 at 1262.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 1,259,680 + -0.0 1,259,733 + +0.5 1,259,753 + +0.0 1,259,753 + -0.1 1,259,789 - +0.3 1,259,877 - +0.0 1,259,882 + -0.8 1,259,882 + -1.3 1,259,882 + -2.4 1,259,882 + -0.5 1,259,882 + +0.7 1,259,882 + +0.7 1,259,883 - -2.1 1,259,883 - -0.2 1,259,883 - +0.1 1,259,883 - -0.3 1,259,883 - +0.9 1,259,885 - -0.6 1,259,886 + +0.2 1,259,955 - -0.0 1,259,994 + -1.4 1,259,995 - +0.1 1,260,055 - -0.0 1,260,207 + -0.5 1,260,207 + -1.7 1,260,233 - -2.3 1,260,362 + -0.3 1,260,362 + -0.6 1,260,507 + -1.1 1,260,508 - -0.4 1,260,508 - +0.3 1,260,508 - +1.0 1,260,532 + +0.0 1,260,538 + -0.9 1,260,539 - +0.5 1,260,539 - +0.4 1,261,029 + SMa2249 0.32 -0.2 1,261,073 + SMa2249 0.36 -0.2 1,261,124 + SMa2249 0.41 +0.6 1,261,238 - SMa2249 0.51 -0.5 1,261,238 - SMa2249 0.51 +0.4 1,261,414 + SMa2249 0.67 +0.3 1,261,547 + SMa2249 0.79 +0.7 1,261,548 - SMa2249 0.79 +1.5 1,261,548 - SMa2249 0.79 +0.1 1,261,548 - SMa2249 0.79 -1.1 1,261,638 + SMa2249 0.87 +0.5 1,261,639 - SMa2249 0.87 +1.4 1,261,924 + SMa2251 0.27 +0.5 1,261,925 - SMa2251 0.27 +1.5 1,262,000 + SMa2251 0.40 +1.1 1,262,021 - SMa2251 0.44 +1.3 1,262,097 + SMa2251 0.57 -0.9 1,262,130 + SMa2251 0.63 -0.6 1,262,130 + SMa2251 0.63 -1.1 1,262,130 + SMa2251 0.63 +2.7 1,262,174 + SMa2251 0.71 -0.0 1,262,252 - SMa2251 0.85 +1.7 1,262,335 + +2.4
Or see this region's nucleotide sequence