Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1753 and SMa1754 overlap by 4 nucleotides SMa1754 and SMa1755 are separated by 98 nucleotides
SMa1753: SMa1753 - ABC transporter permease, at 995,460 to 996,638
SMa1753
SMa1754: SMa1754 - ABC transporter ATP-binding protein, at 996,635 to 997,714
SMa1754
SMa1755: SMa1755 - ABC transporter substrate-binding protein, at 997,813 to 998,865
SMa1755
Position (kb) 996
997
998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.645 kb on - strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.648 kb on - strand, within SMa1753 at 995.653 kb on - strand, within SMa1753 at 995.790 kb on - strand, within SMa1753 at 995.800 kb on + strand, within SMa1753 at 995.840 kb on + strand, within SMa1753 at 995.841 kb on - strand, within SMa1753 at 996.053 kb on - strand, within SMa1753 at 996.542 kb on + strand at 996.542 kb on + strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.571 kb on - strand at 996.572 kb on + strand at 996.678 kb on + strand at 996.679 kb on - strand at 997.035 kb on + strand at 997.035 kb on + strand, within SMa1754 at 997.035 kb on + strand, within SMa1754 at 997.036 kb on - strand, within SMa1754 at 997.432 kb on + strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.449 kb on + strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.522 kb on + strand, within SMa1754 at 997.670 kb on - strand at 997.719 kb on - strand at 998.085 kb on + strand, within SMa1755 at 998.121 kb on + strand, within SMa1755 at 998.121 kb on + strand, within SMa1755 at 998.168 kb on + strand, within SMa1755 at 998.169 kb on - strand, within SMa1755 at 998.169 kb on - strand, within SMa1755 at 998.309 kb on + strand, within SMa1755 at 998.310 kb on - strand, within SMa1755 at 998.358 kb on + strand, within SMa1755 at 998.359 kb on - strand, within SMa1755 at 998.359 kb on - strand, within SMa1755 at 998.460 kb on - strand, within SMa1755 at 998.460 kb on - strand, within SMa1755 at 998.526 kb on + strand, within SMa1755 at 998.527 kb on - strand, within SMa1755 at 998.564 kb on + strand, within SMa1755
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 995,644 + SMa1753 0.16 -1.4 995,644 + SMa1753 0.16 +0.6 995,644 + SMa1753 0.16 -0.4 995,645 - SMa1753 0.16 -0.4 995,647 + SMa1753 0.16 -0.2 995,647 + SMa1753 0.16 -0.8 995,647 + SMa1753 0.16 -0.6 995,647 + SMa1753 0.16 +0.9 995,647 + SMa1753 0.16 -1.4 995,648 - SMa1753 0.16 +0.7 995,653 - SMa1753 0.16 +0.3 995,790 - SMa1753 0.28 +0.9 995,800 + SMa1753 0.29 -1.8 995,840 + SMa1753 0.32 -0.4 995,841 - SMa1753 0.32 +2.2 996,053 - SMa1753 0.50 +0.0 996,542 + +0.8 996,542 + +0.6 996,543 - -0.1 996,543 - +0.6 996,543 - +0.2 996,543 - -0.5 996,571 - +1.1 996,572 + +0.1 996,678 + +0.2 996,679 - -0.4 997,035 + -1.3 997,035 + SMa1754 0.37 +0.2 997,035 + SMa1754 0.37 -0.5 997,036 - SMa1754 0.37 +1.0 997,432 + SMa1754 0.74 +0.3 997,433 - SMa1754 0.74 -1.0 997,433 - SMa1754 0.74 +0.5 997,449 + SMa1754 0.75 +1.6 997,450 - SMa1754 0.75 +1.4 997,450 - SMa1754 0.75 +0.5 997,522 + SMa1754 0.82 -2.9 997,670 - -0.3 997,719 - -1.1 998,085 + SMa1755 0.26 +0.1 998,121 + SMa1755 0.29 +1.3 998,121 + SMa1755 0.29 +0.2 998,168 + SMa1755 0.34 -0.0 998,169 - SMa1755 0.34 +3.0 998,169 - SMa1755 0.34 +0.6 998,309 + SMa1755 0.47 +0.3 998,310 - SMa1755 0.47 +0.4 998,358 + SMa1755 0.52 +0.2 998,359 - SMa1755 0.52 -0.0 998,359 - SMa1755 0.52 +0.3 998,460 - SMa1755 0.61 +0.5 998,460 - SMa1755 0.61 +0.0 998,526 + SMa1755 0.68 +0.4 998,527 - SMa1755 0.68 -0.9 998,564 + SMa1755 0.71 -0.3
Or see this region's nucleotide sequence