Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1589 and SMa1591 are separated by 494 nucleotides
SMa1589: SMa1589 - hypothetical protein, at 883,252 to 883,638
SMa1589
SMa1591: SMa1591 - CyaI3 adenylate/guanylate cyclase, at 884,133 to 887,612
SMa1591
Position (kb) 883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 882.308 kb on + strand at 882.353 kb on - strand at 882.375 kb on - strand at 882.383 kb on + strand at 882.395 kb on + strand at 882.463 kb on - strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.524 kb on - strand at 882.524 kb on - strand at 882.528 kb on - strand at 882.547 kb on + strand at 882.632 kb on + strand at 882.632 kb on + strand at 882.651 kb on + strand at 882.651 kb on + strand at 882.652 kb on - strand at 882.652 kb on - strand at 882.685 kb on + strand at 882.712 kb on + strand at 882.877 kb on + strand at 882.878 kb on - strand at 882.912 kb on + strand at 882.912 kb on + strand at 882.913 kb on - strand at 882.968 kb on + strand at 882.968 kb on + strand at 882.969 kb on - strand at 882.969 kb on - strand at 882.969 kb on - strand at 883.015 kb on + strand at 883.016 kb on - strand at 883.055 kb on + strand at 883.178 kb on + strand at 883.179 kb on - strand at 883.209 kb on + strand at 883.253 kb on + strand at 883.253 kb on + strand at 883.253 kb on + strand at 883.253 kb on + strand at 883.253 kb on + strand at 883.254 kb on - strand at 883.298 kb on - strand, within SMa1589 at 883.318 kb on + strand, within SMa1589 at 883.442 kb on - strand, within SMa1589 at 883.442 kb on - strand, within SMa1589 at 883.455 kb on + strand, within SMa1589 at 883.522 kb on + strand, within SMa1589 at 883.604 kb on + strand at 883.613 kb on + strand at 883.614 kb on - strand at 883.614 kb on - strand at 883.615 kb on + strand at 883.616 kb on - strand at 883.616 kb on - strand at 883.616 kb on - strand at 883.650 kb on + strand at 883.671 kb on - strand at 883.705 kb on + strand at 884.028 kb on - strand at 884.043 kb on - strand at 884.068 kb on + strand at 884.116 kb on + strand at 884.117 kb on - strand at 884.117 kb on - strand at 884.135 kb on - strand at 884.135 kb on - strand at 884.289 kb on + strand at 884.290 kb on - strand at 884.299 kb on - strand at 884.602 kb on - strand, within SMa1591
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 882,308 + +0.4 882,353 - +1.1 882,375 - -2.7 882,383 + -0.8 882,395 + -0.4 882,463 - -0.3 882,523 + -0.4 882,523 + -0.0 882,523 + -0.7 882,523 + +1.1 882,523 + -0.5 882,523 + -0.1 882,524 - -0.5 882,524 - -0.1 882,528 - +0.7 882,547 + +0.2 882,632 + +0.5 882,632 + +0.4 882,651 + -0.1 882,651 + +0.1 882,652 - -0.0 882,652 - -0.3 882,685 + +0.1 882,712 + -0.0 882,877 + +0.4 882,878 - -0.4 882,912 + -0.7 882,912 + -2.9 882,913 - -0.7 882,968 + -1.0 882,968 + +1.1 882,969 - +0.3 882,969 - +0.7 882,969 - +0.5 883,015 + +0.3 883,016 - +0.8 883,055 + -2.3 883,178 + -1.3 883,179 - -2.3 883,209 + -0.1 883,253 + +0.4 883,253 + +0.2 883,253 + -0.0 883,253 + +1.0 883,253 + +0.0 883,254 - +0.0 883,298 - SMa1589 0.12 -0.4 883,318 + SMa1589 0.17 +1.2 883,442 - SMa1589 0.49 +0.1 883,442 - SMa1589 0.49 +1.4 883,455 + SMa1589 0.52 +1.0 883,522 + SMa1589 0.70 -1.1 883,604 + +0.2 883,613 + +0.1 883,614 - -1.9 883,614 - -2.5 883,615 + +1.9 883,616 - -0.6 883,616 - +0.6 883,616 - -0.6 883,650 + +0.4 883,671 - -1.3 883,705 + +0.7 884,028 - -0.1 884,043 - -0.1 884,068 + +1.3 884,116 + +0.3 884,117 - +0.6 884,117 - -2.0 884,135 - -0.6 884,135 - -0.5 884,289 + +1.4 884,290 - +0.4 884,299 - -0.4 884,602 - SMa1591 0.13 -0.4
Or see this region's nucleotide sequence