Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1573 and SMa1576 are separated by 6 nucleotides SMa1576 and SMa1578 are separated by 42 nucleotides SMa1578 and SMa1579 are separated by 259 nucleotides
SMa1573: SMa1573 - CpaE2 pilus assembly protein, at 869,830 to 871,590
SMa1573
SMa1576: SMa1576 - CpaB2 pilus assembly protein, at 871,597 to 872,388
SMa1576
SMa1578: SMa1578 - CpaA2 pilus assembly protein, at 872,431 to 872,943
SMa1578
SMa1579: SMa1579 - hypothetical protein, at 873,203 to 874,498
SMa1579
Position (kb) 871
872
873 Strain fitness (log2 ratio) -1
0
1
2 at 870.706 kb on + strand, within SMa1573 at 870.872 kb on + strand, within SMa1573 at 870.872 kb on + strand, within SMa1573 at 870.873 kb on - strand, within SMa1573 at 871.040 kb on + strand, within SMa1573 at 871.040 kb on + strand, within SMa1573 at 871.041 kb on - strand, within SMa1573 at 871.041 kb on - strand, within SMa1573 at 871.191 kb on - strand, within SMa1573 at 871.223 kb on + strand, within SMa1573 at 871.223 kb on + strand, within SMa1573 at 871.360 kb on + strand, within SMa1573 at 871.361 kb on - strand, within SMa1573 at 871.361 kb on - strand, within SMa1573 at 871.361 kb on - strand, within SMa1573 at 871.371 kb on - strand, within SMa1573 at 871.411 kb on + strand, within SMa1573 at 871.508 kb on - strand at 871.508 kb on - strand at 871.717 kb on - strand, within SMa1576 at 871.880 kb on - strand, within SMa1576 at 871.944 kb on + strand, within SMa1576 at 871.944 kb on + strand, within SMa1576 at 872.048 kb on + strand, within SMa1576 at 872.110 kb on + strand, within SMa1576 at 872.111 kb on - strand, within SMa1576 at 872.379 kb on + strand at 872.433 kb on - strand at 872.502 kb on - strand, within SMa1578 at 872.508 kb on + strand, within SMa1578 at 872.572 kb on + strand, within SMa1578 at 872.572 kb on + strand at 872.628 kb on - strand, within SMa1578 at 872.851 kb on + strand, within SMa1578 at 872.886 kb on - strand, within SMa1578 at 873.040 kb on - strand at 873.114 kb on + strand at 873.114 kb on + strand at 873.115 kb on - strand at 873.365 kb on + strand, within SMa1579
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 870,706 + SMa1573 0.50 -1.3 870,872 + SMa1573 0.59 +0.2 870,872 + SMa1573 0.59 +1.0 870,873 - SMa1573 0.59 -0.3 871,040 + SMa1573 0.69 -0.1 871,040 + SMa1573 0.69 -0.3 871,041 - SMa1573 0.69 -1.6 871,041 - SMa1573 0.69 -0.5 871,191 - SMa1573 0.77 -0.8 871,223 + SMa1573 0.79 +0.7 871,223 + SMa1573 0.79 -0.1 871,360 + SMa1573 0.87 -0.4 871,361 - SMa1573 0.87 +0.4 871,361 - SMa1573 0.87 -0.1 871,361 - SMa1573 0.87 -0.6 871,371 - SMa1573 0.88 -0.1 871,411 + SMa1573 0.90 -0.1 871,508 - +0.9 871,508 - -0.2 871,717 - SMa1576 0.15 +1.1 871,880 - SMa1576 0.36 +1.1 871,944 + SMa1576 0.44 -0.5 871,944 + SMa1576 0.44 -0.8 872,048 + SMa1576 0.57 -0.5 872,110 + SMa1576 0.65 +0.5 872,111 - SMa1576 0.65 +0.6 872,379 + -0.6 872,433 - -1.1 872,502 - SMa1578 0.14 +0.1 872,508 + SMa1578 0.15 +0.6 872,572 + SMa1578 0.27 -1.2 872,572 + +2.3 872,628 - SMa1578 0.38 -0.8 872,851 + SMa1578 0.82 -0.3 872,886 - SMa1578 0.89 -0.4 873,040 - -1.1 873,114 + -0.5 873,114 + +1.0 873,115 - +0.1 873,365 + SMa1579 0.12 +0.1
Or see this region's nucleotide sequence