Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1462 and SMa1465 are separated by 23 nucleotides SMa1465 and SMa1466 overlap by 4 nucleotides SMa1466 and SMa1467 overlap by 4 nucleotides SMa1467 and SMa1471 are separated by 150 nucleotides
SMa1462: SMa1462 - ABC transporter, at 805,588 to 806,478
SMa1462
SMa1465: SMa1465 - ABC transporter permease, at 806,502 to 807,257
SMa1465
SMa1466: SMa1466 - ABC transporter ATP-binding protein, at 807,254 to 808,369
SMa1466
SMa1467: SMa1467 - inner-membrane permease, at 808,366 to 809,028
SMa1467
SMa1471: SMa1471 - hypothetical protein, at 809,179 to 809,859
SMa1471
Position (kb) 807
808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 806.503 kb on + strand at 806.537 kb on - strand at 806.540 kb on - strand at 806.845 kb on + strand, within SMa1465 at 806.845 kb on + strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.907 kb on - strand, within SMa1465 at 807.103 kb on + strand, within SMa1465 at 807.121 kb on + strand, within SMa1465 at 807.280 kb on - strand at 807.280 kb on - strand at 807.297 kb on + strand at 807.708 kb on + strand, within SMa1466 at 807.708 kb on + strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 808.072 kb on + strand, within SMa1466 at 808.123 kb on - strand, within SMa1466 at 808.286 kb on + strand at 808.544 kb on + strand, within SMa1467 at 808.545 kb on - strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.745 kb on + strand, within SMa1467 at 808.760 kb on - strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.776 kb on - strand, within SMa1467 at 808.987 kb on + strand at 808.988 kb on - strand at 809.050 kb on - strand at 809.050 kb on - strand at 809.167 kb on + strand at 809.220 kb on - strand at 809.263 kb on - strand, within SMa1471 at 809.263 kb on - strand, within SMa1471 at 809.315 kb on + strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 806,503 + -0.6 806,537 - -1.7 806,540 - -1.3 806,845 + SMa1465 0.45 +0.0 806,845 + SMa1465 0.45 -0.8 806,846 - SMa1465 0.46 -0.9 806,846 - SMa1465 0.46 -0.7 806,846 - SMa1465 0.46 -0.3 806,907 - SMa1465 0.54 -0.3 807,103 + SMa1465 0.79 -0.2 807,121 + SMa1465 0.82 -0.3 807,280 - -1.6 807,280 - -1.6 807,297 + +0.0 807,708 + SMa1466 0.41 -0.7 807,708 + SMa1466 0.41 -1.6 807,737 - SMa1466 0.43 +0.0 807,737 - SMa1466 0.43 +0.4 808,072 + SMa1466 0.73 +0.6 808,123 - SMa1466 0.78 +0.7 808,286 + -0.1 808,544 + SMa1467 0.27 -0.4 808,545 - SMa1467 0.27 +1.6 808,715 + SMa1467 0.53 +1.1 808,715 + SMa1467 0.53 -0.2 808,715 + SMa1467 0.53 -0.1 808,715 + SMa1467 0.53 +2.2 808,715 + SMa1467 0.53 -0.0 808,716 - SMa1467 0.53 +1.0 808,716 - SMa1467 0.53 +0.5 808,716 - SMa1467 0.53 +0.6 808,745 + SMa1467 0.57 -1.4 808,760 - SMa1467 0.59 +0.5 808,775 + SMa1467 0.62 +0.1 808,775 + SMa1467 0.62 -0.0 808,776 - SMa1467 0.62 -1.3 808,987 + -0.7 808,988 - +0.7 809,050 - +0.3 809,050 - -0.3 809,167 + +0.3 809,220 - -0.1 809,263 - SMa1471 0.12 -2.6 809,263 - SMa1471 0.12 -0.2 809,315 + SMa1471 0.20 -0.1 809,316 - SMa1471 0.20 -2.9 809,316 - SMa1471 0.20 -1.3 809,316 - SMa1471 0.20 +0.1
Or see this region's nucleotide sequence