Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1269 and SMa1272 are separated by 4 nucleotides SMa1272 and SMa1273 are separated by 59 nucleotides
SMa1269: SMa1269 - NorD accessory protein for nitric oxide reductase, at 693,908 to 695,803
SMa1269
SMa1272: SMa1272 - NorQ accessory protein for nitric oxide reductase, at 695,808 to 696,626
SMa1272
SMa1273: SMa1273 - NorB nitric oxide reductase, large subunit, at 696,686 to 698,032
SMa1273
Position (kb) 695
696
697 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 695.065 kb on + strand, within SMa1269 at 695.066 kb on - strand, within SMa1269 at 695.243 kb on + strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.347 kb on - strand, within SMa1269 at 695.347 kb on - strand, within SMa1269 at 695.741 kb on - strand at 695.805 kb on + strand at 695.806 kb on - strand at 695.810 kb on - strand at 695.945 kb on - strand, within SMa1272 at 695.945 kb on - strand, within SMa1272 at 696.000 kb on + strand, within SMa1272 at 696.310 kb on + strand, within SMa1272 at 696.464 kb on + strand, within SMa1272 at 696.574 kb on + strand at 696.626 kb on + strand at 696.632 kb on - strand at 696.725 kb on - strand at 696.779 kb on + strand at 696.779 kb on + strand at 696.780 kb on - strand at 696.967 kb on - strand, within SMa1273 at 696.967 kb on - strand, within SMa1273 at 696.967 kb on - strand, within SMa1273 at 697.000 kb on - strand, within SMa1273 at 697.029 kb on + strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.086 kb on + strand, within SMa1273 at 697.086 kb on + strand, within SMa1273 at 697.089 kb on + strand, within SMa1273 at 697.089 kb on + strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.108 kb on + strand, within SMa1273 at 697.315 kb on - strand, within SMa1273 at 697.315 kb on - strand, within SMa1273 at 697.317 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.485 kb on + strand, within SMa1273 at 697.486 kb on - strand, within SMa1273 at 697.486 kb on - strand, within SMa1273 at 697.494 kb on + strand, within SMa1273 at 697.494 kb on + strand, within SMa1273 at 697.495 kb on - strand, within SMa1273 at 697.527 kb on + strand, within SMa1273 at 697.527 kb on + strand, within SMa1273 at 697.611 kb on - strand, within SMa1273
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 695,065 + SMa1269 0.61 -0.1 695,066 - SMa1269 0.61 -1.0 695,243 + SMa1269 0.70 -1.1 695,244 - SMa1269 0.70 +0.2 695,244 - SMa1269 0.70 +1.1 695,244 - SMa1269 0.70 +0.4 695,347 - SMa1269 0.76 -0.1 695,347 - SMa1269 0.76 -2.6 695,741 - -0.2 695,805 + +0.6 695,806 - +1.6 695,810 - +0.1 695,945 - SMa1272 0.17 +0.4 695,945 - SMa1272 0.17 -0.3 696,000 + SMa1272 0.23 +0.0 696,310 + SMa1272 0.61 -2.8 696,464 + SMa1272 0.80 -0.9 696,574 + +0.1 696,626 + -0.2 696,632 - -0.2 696,725 - -1.2 696,779 + -3.8 696,779 + +0.1 696,780 - +0.6 696,967 - SMa1273 0.21 +0.1 696,967 - SMa1273 0.21 -0.8 696,967 - SMa1273 0.21 -1.9 697,000 - SMa1273 0.23 +0.7 697,029 + SMa1273 0.25 -0.5 697,030 - SMa1273 0.26 -1.5 697,030 - SMa1273 0.26 -0.1 697,030 - SMa1273 0.26 +0.7 697,086 + SMa1273 0.30 -0.6 697,086 + SMa1273 0.30 -0.0 697,089 + SMa1273 0.30 +0.8 697,089 + SMa1273 0.30 -0.2 697,090 - SMa1273 0.30 -1.3 697,090 - SMa1273 0.30 -0.8 697,090 - SMa1273 0.30 -0.2 697,090 - SMa1273 0.30 -0.9 697,090 - SMa1273 0.30 +0.3 697,108 + SMa1273 0.31 +0.1 697,315 - SMa1273 0.47 +0.2 697,315 - SMa1273 0.47 +0.5 697,317 + SMa1273 0.47 -2.6 697,371 + SMa1273 0.51 +0.4 697,371 + SMa1273 0.51 -0.1 697,371 + SMa1273 0.51 -0.6 697,371 + SMa1273 0.51 -0.7 697,372 - SMa1273 0.51 +0.7 697,372 - SMa1273 0.51 +0.6 697,372 - SMa1273 0.51 +1.5 697,372 - SMa1273 0.51 +0.3 697,485 + SMa1273 0.59 +1.5 697,486 - SMa1273 0.59 -1.3 697,486 - SMa1273 0.59 -0.0 697,494 + SMa1273 0.60 -0.4 697,494 + SMa1273 0.60 -0.7 697,495 - SMa1273 0.60 -0.6 697,527 + SMa1273 0.62 -0.6 697,527 + SMa1273 0.62 +0.7 697,611 - SMa1273 0.69 -1.1
Or see this region's nucleotide sequence