Strain Fitness in Sinorhizobium meliloti 1021 around SMa1229

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1226 and SMa1227 are separated by 98 nucleotidesSMa1227 and SMa1229 overlap by 8 nucleotidesSMa1229 and SMa1231 are separated by 233 nucleotides SMa1226: SMa1226 - FixT1 inhibitor of FixL autophosphorylation, at 672,328 to 672,675 SMa1226 SMa1227: SMa1227 - response regulator FixJ, at 672,774 to 673,388 SMa1227 SMa1229: SMa1229 - FixL oxygen regulated histidine kinase, at 673,381 to 674,898 SMa1229 SMa1231: SMa1231 - hypothetical protein, at 675,132 to 675,956 SMa1231 Position (kb) 673 674 675Strain fitness (log2 ratio) -2 -1 0 1 2 3at 672.394 kb on + strand, within SMa1226at 672.505 kb on + strand, within SMa1226at 672.506 kb on - strand, within SMa1226at 672.506 kb on - strand, within SMa1226at 672.506 kb on - strand, within SMa1226at 672.508 kb on + strand, within SMa1226at 672.508 kb on + strand, within SMa1226at 672.508 kb on + strand, within SMa1226at 672.509 kb on - strand, within SMa1226at 672.509 kb on - strand, within SMa1226at 672.509 kb on - strand, within SMa1226at 672.509 kb on - strand, within SMa1226at 672.509 kb on - strand, within SMa1226at 672.509 kb on - strand, within SMa1226at 672.587 kb on + strand, within SMa1226at 672.588 kb on - strand, within SMa1226at 672.588 kb on - strand, within SMa1226at 672.588 kb on - strand, within SMa1226at 672.590 kb on + strand, within SMa1226at 672.590 kb on + strand, within SMa1226at 672.590 kb on + strand, within SMa1226at 672.591 kb on - strand, within SMa1226at 672.591 kb on - strand, within SMa1226at 672.591 kb on - strand, within SMa1226at 672.725 kb on + strandat 672.850 kb on - strand, within SMa1227at 672.850 kb on - strand, within SMa1227at 672.898 kb on + strand, within SMa1227at 672.899 kb on - strand, within SMa1227at 672.987 kb on - strand, within SMa1227at 673.064 kb on + strand, within SMa1227at 673.084 kb on - strand, within SMa1227at 673.084 kb on - strand, within SMa1227at 673.161 kb on + strand, within SMa1227at 673.161 kb on + strand, within SMa1227at 673.162 kb on - strand, within SMa1227at 673.162 kb on - strand, within SMa1227at 673.162 kb on - strand, within SMa1227at 673.163 kb on + strand, within SMa1227at 673.163 kb on + strand, within SMa1227at 673.163 kb on + strand, within SMa1227at 673.163 kb on + strand, within SMa1227at 673.164 kb on - strand, within SMa1227at 673.164 kb on - strand, within SMa1227at 673.166 kb on - strand, within SMa1227at 673.501 kb on - strandat 673.501 kb on - strandat 673.728 kb on + strand, within SMa1229at 673.771 kb on + strand, within SMa1229at 673.771 kb on + strand, within SMa1229at 673.771 kb on + strand, within SMa1229at 673.951 kb on + strand, within SMa1229at 673.995 kb on + strand, within SMa1229at 673.996 kb on - strand, within SMa1229at 674.009 kb on + strand, within SMa1229at 674.009 kb on + strand, within SMa1229at 674.009 kb on + strand, within SMa1229at 674.010 kb on - strand, within SMa1229at 674.111 kb on - strand, within SMa1229at 674.298 kb on - strand, within SMa1229at 674.298 kb on - strand, within SMa1229at 674.298 kb on - strand, within SMa1229at 674.310 kb on - strand, within SMa1229at 674.348 kb on - strand, within SMa1229at 674.348 kb on - strand, within SMa1229at 674.452 kb on - strand, within SMa1229at 674.452 kb on - strand, within SMa1229at 674.452 kb on - strand, within SMa1229at 674.466 kb on + strand, within SMa1229at 674.467 kb on - strand, within SMa1229at 674.473 kb on + strand, within SMa1229at 674.504 kb on - strand, within SMa1229at 674.504 kb on - strand, within SMa1229at 674.504 kb on - strand, within SMa1229at 674.817 kb on + strandat 674.817 kb on + strandat 674.819 kb on + strandat 674.819 kb on + strandat 674.819 kb on + strandat 674.819 kb on + strandat 674.819 kb on + strandat 674.820 kb on - strandat 674.880 kb on + strandat 674.952 kb on + strandat 674.963 kb on + strandat 674.964 kb on - strandat 674.964 kb on - strandat 674.964 kb on - strandat 674.964 kb on - strandat 674.964 kb on - strandat 674.967 kb on + strandat 674.967 kb on + strandat 675.051 kb on + strandat 675.085 kb on + strandat 675.085 kb on + strandat 675.085 kb on + strandat 675.088 kb on + strandat 675.088 kb on + strandat 675.164 kb on + strandat 675.165 kb on - strandat 675.239 kb on - strand, within SMa1231at 675.385 kb on - strand, within SMa1231at 675.482 kb on - strand, within SMa1231at 675.482 kb on - strand, within SMa1231at 675.487 kb on + strand, within SMa1231at 675.514 kb on + strand, within SMa1231at 675.532 kb on - strand, within SMa1231at 675.532 kb on - strand, within SMa1231at 675.575 kb on + strand, within SMa1231at 675.575 kb on + strand, within SMa1231at 675.676 kb on + strand, within SMa1231at 675.676 kb on + strand, within SMa1231at 675.741 kb on + strand, within SMa1231at 675.741 kb on + strand, within SMa1231at 675.741 kb on + strand, within SMa1231at 675.742 kb on - strand, within SMa1231at 675.812 kb on - strand, within SMa1231at 675.865 kb on - strand, within SMa1231

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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672,394 + SMa1226 0.19 -2.0
672,505 + SMa1226 0.51 +0.5
672,506 - SMa1226 0.51 -1.5
672,506 - SMa1226 0.51 -1.3
672,506 - SMa1226 0.51 -1.9
672,508 + SMa1226 0.52 +0.3
672,508 + SMa1226 0.52 +0.2
672,508 + SMa1226 0.52 -0.8
672,509 - SMa1226 0.52 -1.0
672,509 - SMa1226 0.52 -0.9
672,509 - SMa1226 0.52 -1.1
672,509 - SMa1226 0.52 -0.6
672,509 - SMa1226 0.52 +0.5
672,509 - SMa1226 0.52 -0.0
672,587 + SMa1226 0.74 +0.6
672,588 - SMa1226 0.75 -0.6
672,588 - SMa1226 0.75 -0.4
672,588 - SMa1226 0.75 +0.7
672,590 + SMa1226 0.75 -0.9
672,590 + SMa1226 0.75 -0.5
672,590 + SMa1226 0.75 -0.4
672,591 - SMa1226 0.76 -0.3
672,591 - SMa1226 0.76 -0.0
672,591 - SMa1226 0.76 -1.8
672,725 + -2.1
672,850 - SMa1227 0.12 +1.4
672,850 - SMa1227 0.12 +0.3
672,898 + SMa1227 0.20 +0.6
672,899 - SMa1227 0.20 +0.7
672,987 - SMa1227 0.35 +1.5
673,064 + SMa1227 0.47 +1.1
673,084 - SMa1227 0.50 -0.8
673,084 - SMa1227 0.50 +1.2
673,161 + SMa1227 0.63 +0.5
673,161 + SMa1227 0.63 -1.2
673,162 - SMa1227 0.63 +0.6
673,162 - SMa1227 0.63 +0.1
673,162 - SMa1227 0.63 +1.9
673,163 + SMa1227 0.63 +0.6
673,163 + SMa1227 0.63 +0.4
673,163 + SMa1227 0.63 +0.9
673,163 + SMa1227 0.63 +1.7
673,164 - SMa1227 0.63 +0.6
673,164 - SMa1227 0.63 +1.5
673,166 - SMa1227 0.64 -0.1
673,501 - +0.6
673,501 - -0.8
673,728 + SMa1229 0.23 -0.5
673,771 + SMa1229 0.26 +0.7
673,771 + SMa1229 0.26 +0.7
673,771 + SMa1229 0.26 +1.3
673,951 + SMa1229 0.38 +0.7
673,995 + SMa1229 0.40 -0.1
673,996 - SMa1229 0.41 +0.2
674,009 + SMa1229 0.41 +2.0
674,009 + SMa1229 0.41 +1.1
674,009 + SMa1229 0.41 +1.7
674,010 - SMa1229 0.41 +0.6
674,111 - SMa1229 0.48 +0.4
674,298 - SMa1229 0.60 +0.1
674,298 - SMa1229 0.60 +0.4
674,298 - SMa1229 0.60 +1.0
674,310 - SMa1229 0.61 -2.1
674,348 - SMa1229 0.64 +0.7
674,348 - SMa1229 0.64 +1.2
674,452 - SMa1229 0.71 +3.4
674,452 - SMa1229 0.71 -1.5
674,452 - SMa1229 0.71 +0.4
674,466 + SMa1229 0.71 +0.1
674,467 - SMa1229 0.72 +0.7
674,473 + SMa1229 0.72 -0.9
674,504 - SMa1229 0.74 -0.3
674,504 - SMa1229 0.74 +1.0
674,504 - SMa1229 0.74 +0.0
674,817 + -0.3
674,817 + +0.1
674,819 + -0.5
674,819 + +0.5
674,819 + +0.2
674,819 + -0.5
674,819 + +0.1
674,820 - -0.1
674,880 + +0.1
674,952 + -0.3
674,963 + +0.7
674,964 - -0.3
674,964 - -0.1
674,964 - -0.5
674,964 - +0.7
674,964 - -2.5
674,967 + +0.8
674,967 + +0.3
675,051 + -1.1
675,085 + -0.9
675,085 + -0.7
675,085 + -0.5
675,088 + +0.2
675,088 + -0.6
675,164 + -0.1
675,165 - -0.4
675,239 - SMa1231 0.13 -0.3
675,385 - SMa1231 0.31 -0.6
675,482 - SMa1231 0.42 +0.8
675,482 - SMa1231 0.42 -0.7
675,487 + SMa1231 0.43 -0.0
675,514 + SMa1231 0.46 -0.7
675,532 - SMa1231 0.48 +0.5
675,532 - SMa1231 0.48 -0.5
675,575 + SMa1231 0.54 -1.0
675,575 + SMa1231 0.54 +0.4
675,676 + SMa1231 0.66 -0.2
675,676 + SMa1231 0.66 +0.4
675,741 + SMa1231 0.74 +0.6
675,741 + SMa1231 0.74 -0.5
675,741 + SMa1231 0.74 -2.6
675,742 - SMa1231 0.74 +1.1
675,812 - SMa1231 0.82 +0.8
675,865 - SMa1231 0.89 +0.0

Or see this region's nucleotide sequence