Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1184 and SMa1185 overlap by 4 nucleotides SMa1185 and SMa1186 overlap by 4 nucleotides SMa1186 and SMa1188 overlap by 8 nucleotides
SMa1184: SMa1184 - NosF ATPase, at 651,246 to 652,160
SMa1184
SMa1185: SMa1185 - NosY permease, at 652,157 to 652,984
SMa1185
SMa1186: SMa1186 - NosL copper chaperone, at 652,981 to 653,538
SMa1186
SMa1188: SMa1188 - NosX accesory protein, at 653,531 to 654,535
SMa1188
Position (kb) 652
653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.126 kb on - strand at 652.126 kb on - strand at 652.126 kb on - strand at 652.126 kb on - strand at 652.165 kb on + strand at 652.171 kb on + strand at 652.218 kb on + strand at 652.236 kb on + strand at 652.236 kb on + strand at 652.278 kb on + strand, within SMa1185 at 652.434 kb on - strand, within SMa1185 at 652.488 kb on + strand, within SMa1185 at 652.645 kb on - strand, within SMa1185 at 652.645 kb on - strand, within SMa1185 at 652.693 kb on + strand, within SMa1185 at 652.694 kb on - strand, within SMa1185 at 652.694 kb on - strand, within SMa1185 at 652.718 kb on + strand, within SMa1185 at 652.818 kb on - strand, within SMa1185 at 652.834 kb on - strand, within SMa1185 at 652.980 kb on + strand at 652.980 kb on + strand at 652.980 kb on + strand at 652.981 kb on - strand at 653.049 kb on + strand, within SMa1186 at 653.049 kb on + strand, within SMa1186 at 653.049 kb on + strand, within SMa1186 at 653.050 kb on - strand, within SMa1186 at 653.098 kb on + strand, within SMa1186 at 653.245 kb on + strand, within SMa1186 at 653.245 kb on + strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.255 kb on - strand, within SMa1186 at 653.323 kb on + strand, within SMa1186 at 653.324 kb on - strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.459 kb on - strand, within SMa1186 at 653.459 kb on - strand, within SMa1186 at 653.689 kb on - strand, within SMa1188 at 653.897 kb on - strand, within SMa1188 at 653.921 kb on + strand, within SMa1188 at 653.921 kb on + strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 654.078 kb on + strand, within SMa1188 at 654.078 kb on + strand, within SMa1188 at 654.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 652,126 - +0.6 652,126 - -1.1 652,126 - +0.7 652,126 - +1.3 652,165 + +0.7 652,171 + +0.5 652,218 + +0.3 652,236 + -2.0 652,236 + +0.4 652,278 + SMa1185 0.15 +3.2 652,434 - SMa1185 0.33 -0.0 652,488 + SMa1185 0.40 +0.5 652,645 - SMa1185 0.59 +0.2 652,645 - SMa1185 0.59 -0.1 652,693 + SMa1185 0.65 +0.7 652,694 - SMa1185 0.65 +0.4 652,694 - SMa1185 0.65 -0.1 652,718 + SMa1185 0.68 -0.3 652,818 - SMa1185 0.80 +0.2 652,834 - SMa1185 0.82 +0.4 652,980 + +0.4 652,980 + +0.5 652,980 + -0.5 652,981 - -0.2 653,049 + SMa1186 0.12 -1.0 653,049 + SMa1186 0.12 -1.3 653,049 + SMa1186 0.12 +0.3 653,050 - SMa1186 0.12 -1.2 653,098 + SMa1186 0.21 +0.4 653,245 + SMa1186 0.47 +0.5 653,245 + SMa1186 0.47 +0.7 653,246 - SMa1186 0.47 -0.3 653,246 - SMa1186 0.47 -0.5 653,246 - SMa1186 0.47 -0.3 653,246 - SMa1186 0.47 -0.0 653,255 - SMa1186 0.49 -1.2 653,323 + SMa1186 0.61 -2.4 653,324 - SMa1186 0.61 +0.1 653,458 + SMa1186 0.85 -1.0 653,458 + SMa1186 0.85 +0.1 653,458 + SMa1186 0.85 -1.4 653,459 - SMa1186 0.86 +0.7 653,459 - SMa1186 0.86 -0.3 653,689 - SMa1188 0.16 +0.3 653,897 - SMa1188 0.36 +1.3 653,921 + SMa1188 0.39 -0.1 653,921 + SMa1188 0.39 -0.8 653,922 - SMa1188 0.39 -0.6 653,922 - SMa1188 0.39 -3.6 653,922 - SMa1188 0.39 +0.9 654,078 + SMa1188 0.54 +0.7 654,078 + SMa1188 0.54 -0.3 654,478 - -2.1
Or see this region's nucleotide sequence