Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0875 and SMa0876 are separated by 3 nucleotides SMa0876 and SMa0878 are separated by 57 nucleotides
SMa0875: SMa0875 - NolG efflux transporter, at 485,661 to 488,858
SMa0875
SMa0876: SMa0876 - NolF secretion protein, at 488,862 to 489,965
SMa0876
SMa0878: SMa0878 - glucosamine--fructose-6-phosphate aminotransferase, at 490,023 to 491,849
SMa0878
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 488.039 kb on - strand, within SMa0875 at 488.039 kb on - strand, within SMa0875 at 488.201 kb on + strand, within SMa0875 at 488.201 kb on + strand, within SMa0875 at 488.272 kb on + strand, within SMa0875 at 488.272 kb on + strand, within SMa0875 at 488.357 kb on + strand, within SMa0875 at 488.357 kb on + strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.605 kb on + strand at 488.707 kb on + strand at 488.707 kb on + strand at 488.708 kb on - strand at 488.708 kb on - strand at 488.774 kb on - strand at 488.816 kb on + strand at 488.843 kb on + strand at 488.844 kb on - strand at 489.105 kb on + strand, within SMa0876 at 489.106 kb on - strand, within SMa0876 at 489.252 kb on + strand, within SMa0876 at 489.264 kb on + strand, within SMa0876 at 489.483 kb on + strand, within SMa0876 at 489.484 kb on - strand, within SMa0876 at 489.718 kb on - strand, within SMa0876 at 489.718 kb on - strand, within SMa0876 at 489.755 kb on + strand, within SMa0876 at 489.755 kb on + strand at 489.755 kb on + strand, within SMa0876 at 489.756 kb on - strand, within SMa0876 at 489.756 kb on - strand, within SMa0876 at 489.774 kb on + strand, within SMa0876 at 489.786 kb on + strand, within SMa0876 at 489.788 kb on + strand, within SMa0876 at 489.789 kb on - strand, within SMa0876 at 489.858 kb on - strand at 489.957 kb on + strand at 489.975 kb on + strand at 489.976 kb on - strand at 490.008 kb on - strand at 490.008 kb on - strand at 490.092 kb on - strand at 490.097 kb on - strand at 490.380 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 488,039 - SMa0875 0.74 +0.2 488,039 - SMa0875 0.74 -0.2 488,201 + SMa0875 0.79 +0.2 488,201 + SMa0875 0.79 +2.1 488,272 + SMa0875 0.82 -0.3 488,272 + SMa0875 0.82 -0.6 488,357 + SMa0875 0.84 +0.4 488,357 + SMa0875 0.84 +0.5 488,358 - SMa0875 0.84 +0.2 488,358 - SMa0875 0.84 -2.3 488,358 - SMa0875 0.84 +1.8 488,605 + -0.1 488,707 + -0.3 488,707 + +0.4 488,708 - -0.8 488,708 - +0.0 488,774 - -0.7 488,816 + +0.3 488,843 + -0.6 488,844 - -1.4 489,105 + SMa0876 0.22 +1.2 489,106 - SMa0876 0.22 +0.7 489,252 + SMa0876 0.35 -1.9 489,264 + SMa0876 0.36 -1.9 489,483 + SMa0876 0.56 -0.4 489,484 - SMa0876 0.56 +0.3 489,718 - SMa0876 0.78 -0.5 489,718 - SMa0876 0.78 -0.0 489,755 + SMa0876 0.81 -0.4 489,755 + +1.9 489,755 + SMa0876 0.81 +0.4 489,756 - SMa0876 0.81 -0.4 489,756 - SMa0876 0.81 +0.3 489,774 + SMa0876 0.83 +1.0 489,786 + SMa0876 0.84 +0.6 489,788 + SMa0876 0.84 -0.6 489,789 - SMa0876 0.84 -0.8 489,858 - -2.1 489,957 + +0.1 489,975 + -1.5 489,976 - +0.5 490,008 - -0.0 490,008 - -0.2 490,092 - +1.6 490,097 - +3.2 490,380 - SMa0878 0.20 +1.2 490,382 - SMa0878 0.20 +0.4 490,382 - SMa0878 0.20 +0.7 490,382 - SMa0878 0.20 +1.4
Or see this region's nucleotide sequence