Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0673 and SMa0674 overlap by 8 nucleotides SMa0674 and SMa0675 overlap by 4 nucleotides
SMa0673: SMa0673 - TRm3 transposase, at 358,810 to 360,012
SMa0673
SMa0674: SMa0674 - hypothetical protein, at 360,005 to 360,349
SMa0674
SMa0675: SMa0675 - Ca2+/H+ antiporter, at 360,346 to 361,491
SMa0675
Position (kb) 360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 360.129 kb on + strand, within SMa0674 at 360.130 kb on - strand, within SMa0674 at 360.392 kb on - strand at 360.392 kb on - strand at 360.425 kb on + strand at 360.425 kb on + strand at 360.540 kb on - strand, within SMa0675 at 360.540 kb on - strand, within SMa0675 at 360.718 kb on + strand, within SMa0675 at 360.718 kb on + strand, within SMa0675 at 360.719 kb on - strand, within SMa0675 at 360.905 kb on + strand, within SMa0675 at 360.906 kb on - strand, within SMa0675 at 360.914 kb on - strand, within SMa0675 at 361.123 kb on - strand, within SMa0675 at 361.123 kb on - strand, within SMa0675 at 361.166 kb on + strand, within SMa0675 at 361.167 kb on - strand, within SMa0675 at 361.195 kb on - strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.337 kb on - strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 360,129 + SMa0674 0.36 +0.4 360,130 - SMa0674 0.36 +1.1 360,392 - +0.1 360,392 - -1.6 360,425 + -0.2 360,425 + -0.2 360,540 - SMa0675 0.17 -3.1 360,540 - SMa0675 0.17 -1.6 360,718 + SMa0675 0.32 +1.1 360,718 + SMa0675 0.32 -2.2 360,719 - SMa0675 0.33 -2.3 360,905 + SMa0675 0.49 -0.6 360,906 - SMa0675 0.49 -0.3 360,914 - SMa0675 0.50 -0.8 361,123 - SMa0675 0.68 -0.3 361,123 - SMa0675 0.68 +0.3 361,166 + SMa0675 0.72 +0.8 361,167 - SMa0675 0.72 -2.5 361,195 - SMa0675 0.74 -1.3 361,197 + SMa0675 0.74 +0.0 361,197 + SMa0675 0.74 -0.9 361,197 + SMa0675 0.74 -0.3 361,337 - SMa0675 0.86 +0.2 361,341 + SMa0675 0.87 +1.2 361,341 + SMa0675 0.87 +0.3 361,341 + SMa0675 0.87 -0.0 361,341 + SMa0675 0.87 +0.2 361,342 - SMa0675 0.87 -0.3 361,342 - SMa0675 0.87 +0.5 361,342 - SMa0675 0.87 +2.1 361,342 - SMa0675 0.87 -0.1
Or see this region's nucleotide sequence