Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0665 and SMa0667 are separated by 497 nucleotides SMa0667 and SMa0669 are separated by 3 nucleotides SMa0669 and SMa0670 are separated by 109 nucleotides
SMa0665: SMa0665 - hypothetical protein, at 353,876 to 355,030
SMa0665
SMa0667: SMa0667 - hypothetical protein, at 355,528 to 356,016
SMa0667
SMa0669: SMa0669 - hemolysin D, at 356,020 to 357,249
SMa0669
SMa0670: SMa0670 - regulatory protein, at 357,359 to 358,213
SMa0670
Position (kb) 356
357
358 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 355.238 kb on + strand at 355.243 kb on + strand at 355.248 kb on + strand at 355.364 kb on + strand at 355.369 kb on - strand at 355.508 kb on + strand at 355.661 kb on - strand, within SMa0667 at 355.790 kb on + strand, within SMa0667 at 355.791 kb on - strand, within SMa0667 at 355.974 kb on - strand at 355.995 kb on + strand at 355.996 kb on - strand at 355.996 kb on - strand at 356.080 kb on + strand at 356.080 kb on + strand at 356.081 kb on - strand at 356.081 kb on - strand at 356.112 kb on - strand at 356.197 kb on + strand, within SMa0669 at 356.197 kb on + strand, within SMa0669 at 356.212 kb on - strand, within SMa0669 at 356.243 kb on + strand, within SMa0669 at 356.285 kb on - strand, within SMa0669 at 356.285 kb on - strand, within SMa0669 at 356.285 kb on - strand, within SMa0669 at 356.441 kb on + strand, within SMa0669 at 356.465 kb on - strand, within SMa0669 at 356.521 kb on - strand, within SMa0669 at 356.730 kb on - strand, within SMa0669 at 356.730 kb on - strand, within SMa0669 at 356.760 kb on + strand, within SMa0669 at 356.760 kb on + strand, within SMa0669 at 356.761 kb on - strand, within SMa0669 at 356.761 kb on - strand, within SMa0669 at 356.761 kb on - strand at 357.037 kb on + strand, within SMa0669 at 357.038 kb on - strand, within SMa0669 at 357.038 kb on - strand, within SMa0669 at 357.038 kb on - strand, within SMa0669 at 357.059 kb on + strand, within SMa0669 at 357.091 kb on + strand, within SMa0669 at 357.113 kb on + strand, within SMa0669 at 357.114 kb on - strand, within SMa0669 at 357.287 kb on + strand at 357.287 kb on + strand at 357.288 kb on - strand at 357.345 kb on + strand at 357.345 kb on + strand at 357.346 kb on - strand at 357.346 kb on - strand at 357.462 kb on - strand, within SMa0670 at 357.586 kb on - strand, within SMa0670 at 357.636 kb on + strand, within SMa0670 at 357.671 kb on + strand, within SMa0670 at 357.671 kb on + strand, within SMa0670 at 357.672 kb on - strand, within SMa0670 at 357.672 kb on - strand, within SMa0670 at 357.683 kb on + strand at 357.684 kb on - strand, within SMa0670 at 357.685 kb on + strand, within SMa0670 at 357.686 kb on - strand, within SMa0670 at 357.687 kb on + strand, within SMa0670 at 357.687 kb on + strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.847 kb on - strand, within SMa0670 at 357.847 kb on - strand, within SMa0670 at 357.847 kb on - strand, within SMa0670 at 357.857 kb on - strand, within SMa0670 at 357.857 kb on - strand, within SMa0670 at 357.874 kb on - strand, within SMa0670 at 357.940 kb on - strand, within SMa0670 at 357.980 kb on + strand, within SMa0670 at 357.992 kb on + strand, within SMa0670 at 358.057 kb on + strand, within SMa0670 at 358.081 kb on + strand, within SMa0670 at 358.090 kb on + strand, within SMa0670 at 358.109 kb on + strand, within SMa0670
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 355,238 + -0.1 355,243 + +0.5 355,248 + +0.0 355,364 + -0.3 355,369 - -0.3 355,508 + -1.5 355,661 - SMa0667 0.27 +0.4 355,790 + SMa0667 0.54 -0.9 355,791 - SMa0667 0.54 -0.2 355,974 - +0.3 355,995 + -0.4 355,996 - -2.9 355,996 - +0.1 356,080 + +0.1 356,080 + -1.9 356,081 - +2.1 356,081 - -0.2 356,112 - +0.0 356,197 + SMa0669 0.14 -0.0 356,197 + SMa0669 0.14 -2.1 356,212 - SMa0669 0.16 -0.6 356,243 + SMa0669 0.18 +0.0 356,285 - SMa0669 0.22 -3.9 356,285 - SMa0669 0.22 -0.6 356,285 - SMa0669 0.22 +0.4 356,441 + SMa0669 0.34 +0.8 356,465 - SMa0669 0.36 +0.7 356,521 - SMa0669 0.41 -0.4 356,730 - SMa0669 0.58 -1.2 356,730 - SMa0669 0.58 -0.7 356,760 + SMa0669 0.60 -0.9 356,760 + SMa0669 0.60 +0.0 356,761 - SMa0669 0.60 +0.2 356,761 - SMa0669 0.60 -0.7 356,761 - -1.6 357,037 + SMa0669 0.83 -0.2 357,038 - SMa0669 0.83 -0.2 357,038 - SMa0669 0.83 +0.4 357,038 - SMa0669 0.83 -0.0 357,059 + SMa0669 0.84 -0.3 357,091 + SMa0669 0.87 +0.5 357,113 + SMa0669 0.89 -0.0 357,114 - SMa0669 0.89 -1.0 357,287 + -0.6 357,287 + -0.4 357,288 - +0.4 357,345 + -0.7 357,345 + -0.9 357,346 - +0.2 357,346 - -0.0 357,462 - SMa0670 0.12 +1.0 357,586 - SMa0670 0.27 +0.5 357,636 + SMa0670 0.32 -0.3 357,671 + SMa0670 0.36 -0.3 357,671 + SMa0670 0.36 +2.7 357,672 - SMa0670 0.37 -2.3 357,672 - SMa0670 0.37 +1.2 357,683 + -2.1 357,684 - SMa0670 0.38 +0.4 357,685 + SMa0670 0.38 -1.1 357,686 - SMa0670 0.38 -0.5 357,687 + SMa0670 0.38 +0.2 357,687 + SMa0670 0.38 +0.1 357,688 - SMa0670 0.38 -1.8 357,688 - SMa0670 0.38 +0.4 357,688 - SMa0670 0.38 +0.6 357,688 - SMa0670 0.38 -2.5 357,688 - SMa0670 0.38 +0.3 357,847 - SMa0670 0.57 +0.5 357,847 - SMa0670 0.57 +0.3 357,847 - SMa0670 0.57 +0.3 357,857 - SMa0670 0.58 -0.6 357,857 - SMa0670 0.58 -1.0 357,874 - SMa0670 0.60 +0.8 357,940 - SMa0670 0.68 -0.1 357,980 + SMa0670 0.73 -0.7 357,992 + SMa0670 0.74 +0.4 358,057 + SMa0670 0.82 +0.2 358,081 + SMa0670 0.84 +0.1 358,090 + SMa0670 0.85 +0.8 358,109 + SMa0670 0.88 +0.3
Or see this region's nucleotide sequence