Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0612 and SMa0615 are separated by 4 nucleotides SMa0615 and SMa0616 are separated by 22 nucleotides SMa0616 and SMa0617 overlap by 10 nucleotides
SMa0612: SMa0612 - cbb3-type cytochrome c oxidase subunit I, at 326,972 to 328,627
SMa0612
SMa0615: SMa0615 - cbb3-type cytochrome c oxidase subunit II, at 328,632 to 329,384
SMa0615
SMa0616: SMa0616 - FixQ3 nitrogen fixation protein, at 329,407 to 329,577
SMa0616
SMa0617: SMa0617 - FixP3 Diheme c-type cytochrome, at 329,568 to 330,449
SMa0617
Position (kb) 328
329
330 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.645 kb on - strand, within SMa0612 at 327.645 kb on - strand, within SMa0612 at 327.645 kb on - strand, within SMa0612 at 327.645 kb on - strand, within SMa0612 at 327.830 kb on + strand, within SMa0612 at 327.830 kb on + strand, within SMa0612 at 327.830 kb on + strand, within SMa0612 at 327.830 kb on + strand, within SMa0612 at 327.831 kb on - strand, within SMa0612 at 327.833 kb on + strand, within SMa0612 at 327.834 kb on - strand, within SMa0612 at 327.834 kb on - strand, within SMa0612 at 327.834 kb on - strand, within SMa0612 at 327.912 kb on - strand, within SMa0612 at 327.912 kb on - strand, within SMa0612 at 327.941 kb on + strand, within SMa0612 at 327.942 kb on - strand, within SMa0612 at 327.942 kb on - strand, within SMa0612 at 327.942 kb on - strand, within SMa0612 at 328.088 kb on - strand, within SMa0612 at 328.172 kb on + strand, within SMa0612 at 328.172 kb on + strand, within SMa0612 at 328.173 kb on - strand, within SMa0612 at 328.174 kb on + strand, within SMa0612 at 328.236 kb on - strand, within SMa0612 at 328.236 kb on - strand, within SMa0612 at 328.236 kb on - strand, within SMa0612 at 328.247 kb on + strand, within SMa0612 at 328.286 kb on + strand, within SMa0612 at 328.286 kb on + strand, within SMa0612 at 328.338 kb on + strand, within SMa0612 at 328.339 kb on - strand, within SMa0612 at 328.343 kb on + strand, within SMa0612 at 328.343 kb on + strand, within SMa0612 at 328.343 kb on + strand, within SMa0612 at 328.344 kb on - strand, within SMa0612 at 328.344 kb on - strand, within SMa0612 at 328.344 kb on - strand, within SMa0612 at 328.397 kb on + strand, within SMa0612 at 328.397 kb on + strand, within SMa0612 at 328.397 kb on + strand, within SMa0612 at 328.398 kb on - strand, within SMa0612 at 328.398 kb on - strand, within SMa0612 at 328.398 kb on - strand, within SMa0612 at 328.398 kb on - strand, within SMa0612 at 328.398 kb on - strand, within SMa0612 at 328.400 kb on - strand, within SMa0612 at 328.422 kb on - strand, within SMa0612 at 328.451 kb on + strand, within SMa0612 at 328.451 kb on + strand, within SMa0612 at 328.452 kb on - strand, within SMa0612 at 328.457 kb on + strand, within SMa0612 at 328.457 kb on + strand, within SMa0612 at 328.458 kb on - strand, within SMa0612 at 328.458 kb on - strand, within SMa0612 at 328.461 kb on - strand, within SMa0612 at 328.462 kb on + strand at 328.517 kb on + strand at 328.518 kb on - strand at 328.815 kb on + strand, within SMa0615 at 328.816 kb on - strand, within SMa0615 at 328.833 kb on + strand, within SMa0615 at 328.834 kb on - strand, within SMa0615 at 328.917 kb on + strand, within SMa0615 at 328.972 kb on + strand, within SMa0615 at 328.973 kb on - strand, within SMa0615 at 328.984 kb on - strand, within SMa0615 at 328.984 kb on - strand, within SMa0615 at 329.002 kb on + strand, within SMa0615 at 329.002 kb on + strand, within SMa0615 at 329.055 kb on + strand, within SMa0615 at 329.136 kb on + strand, within SMa0615 at 329.337 kb on + strand at 329.338 kb on - strand at 329.338 kb on - strand at 329.338 kb on - strand at 329.338 kb on - strand at 329.745 kb on + strand, within SMa0617 at 329.745 kb on + strand, within SMa0617 at 329.745 kb on + strand, within SMa0617 at 329.746 kb on - strand, within SMa0617 at 329.747 kb on + strand, within SMa0617 at 329.747 kb on + strand, within SMa0617 at 329.843 kb on + strand, within SMa0617 at 329.844 kb on - strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.864 kb on - strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 330.141 kb on + strand, within SMa0617 at 330.142 kb on - strand, within SMa0617 at 330.142 kb on - strand, within SMa0617 at 330.168 kb on + strand, within SMa0617 at 330.307 kb on - strand, within SMa0617 at 330.327 kb on - strand, within SMa0617 at 330.362 kb on + strand at 330.362 kb on + strand at 330.363 kb on - strand at 330.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 327,644 + SMa0612 0.41 -0.6 327,644 + SMa0612 0.41 +0.9 327,644 + SMa0612 0.41 +0.3 327,644 + SMa0612 0.41 +1.6 327,644 + SMa0612 0.41 +0.1 327,644 + SMa0612 0.41 -0.9 327,644 + SMa0612 0.41 +0.5 327,645 - SMa0612 0.41 -0.2 327,645 - SMa0612 0.41 +0.7 327,645 - SMa0612 0.41 -2.9 327,645 - SMa0612 0.41 -2.3 327,830 + SMa0612 0.52 +0.7 327,830 + SMa0612 0.52 -0.6 327,830 + SMa0612 0.52 +2.2 327,830 + SMa0612 0.52 +0.5 327,831 - SMa0612 0.52 +0.5 327,833 + SMa0612 0.52 +1.0 327,834 - SMa0612 0.52 +0.2 327,834 - SMa0612 0.52 +0.7 327,834 - SMa0612 0.52 +0.3 327,912 - SMa0612 0.57 +0.2 327,912 - SMa0612 0.57 +0.7 327,941 + SMa0612 0.59 -0.4 327,942 - SMa0612 0.59 -4.1 327,942 - SMa0612 0.59 +1.6 327,942 - SMa0612 0.59 -0.0 328,088 - SMa0612 0.67 -0.1 328,172 + SMa0612 0.72 +0.4 328,172 + SMa0612 0.72 -1.9 328,173 - SMa0612 0.73 +0.1 328,174 + SMa0612 0.73 -0.7 328,236 - SMa0612 0.76 -1.1 328,236 - SMa0612 0.76 -0.3 328,236 - SMa0612 0.76 -0.3 328,247 + SMa0612 0.77 -0.7 328,286 + SMa0612 0.79 -0.6 328,286 + SMa0612 0.79 +0.1 328,338 + SMa0612 0.82 -2.0 328,339 - SMa0612 0.83 -0.5 328,343 + SMa0612 0.83 +1.2 328,343 + SMa0612 0.83 -0.2 328,343 + SMa0612 0.83 -0.7 328,344 - SMa0612 0.83 -1.0 328,344 - SMa0612 0.83 -0.1 328,344 - SMa0612 0.83 -0.2 328,397 + SMa0612 0.86 -1.2 328,397 + SMa0612 0.86 -1.3 328,397 + SMa0612 0.86 -0.6 328,398 - SMa0612 0.86 -0.0 328,398 - SMa0612 0.86 +1.7 328,398 - SMa0612 0.86 -0.2 328,398 - SMa0612 0.86 +0.6 328,398 - SMa0612 0.86 -0.4 328,400 - SMa0612 0.86 -1.0 328,422 - SMa0612 0.88 -0.0 328,451 + SMa0612 0.89 -2.2 328,451 + SMa0612 0.89 -0.1 328,452 - SMa0612 0.89 +0.1 328,457 + SMa0612 0.90 +0.9 328,457 + SMa0612 0.90 +0.8 328,458 - SMa0612 0.90 +0.1 328,458 - SMa0612 0.90 -0.2 328,461 - SMa0612 0.90 -0.6 328,462 + -1.9 328,517 + -0.0 328,518 - -0.5 328,815 + SMa0615 0.24 -0.1 328,816 - SMa0615 0.24 +0.3 328,833 + SMa0615 0.27 -0.4 328,834 - SMa0615 0.27 -0.4 328,917 + SMa0615 0.38 -1.9 328,972 + SMa0615 0.45 +0.2 328,973 - SMa0615 0.45 -0.1 328,984 - SMa0615 0.47 -0.0 328,984 - SMa0615 0.47 -0.8 329,002 + SMa0615 0.49 -1.0 329,002 + SMa0615 0.49 +0.3 329,055 + SMa0615 0.56 -1.4 329,136 + SMa0615 0.67 -0.3 329,337 + -1.1 329,338 - -1.0 329,338 - -0.2 329,338 - -0.2 329,338 - -0.2 329,745 + SMa0617 0.20 +0.2 329,745 + SMa0617 0.20 +0.7 329,745 + SMa0617 0.20 -0.4 329,746 - SMa0617 0.20 -0.4 329,747 + SMa0617 0.20 -0.9 329,747 + SMa0617 0.20 -0.5 329,843 + SMa0617 0.31 -0.8 329,844 - SMa0617 0.31 +1.1 329,863 + SMa0617 0.33 -0.1 329,863 + SMa0617 0.33 +0.6 329,863 + SMa0617 0.33 -0.1 329,864 - SMa0617 0.34 +0.2 329,970 + SMa0617 0.46 +3.3 329,970 + SMa0617 0.46 -0.5 329,970 + SMa0617 0.46 -0.1 330,141 + SMa0617 0.65 +0.6 330,142 - SMa0617 0.65 +1.7 330,142 - SMa0617 0.65 +0.5 330,168 + SMa0617 0.68 +0.6 330,307 - SMa0617 0.84 +1.2 330,327 - SMa0617 0.86 +0.4 330,362 + -0.3 330,362 + -0.7 330,363 - -1.0 330,363 - +0.6
Or see this region's nucleotide sequence